1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...atttagtttgatttcaaacaaattcgctccgaaattttggcagaagattaaaccctgcacacggtttaacgctgccgatgccttgtgttgaattgcgaagGTACGGGCTGCCGTTCGTGTCCCCAAACAACATCCTGGTGTCGACGATCAACGGCGCCGGCGCGGTGATCGAGACGGCGTACGTGGTGGTGTTCCTCGTG
species | Oryza sativa |
transcript | LOC_Os05g35140.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCTGGGGTGCCATACAACATGACACTCATCAACTGCCTCCTCTCTGCATG GTACGGGCTGCCGTTCGTGTCCNCAAACAACATCCEST: gi|88573529|gb|CI665100.1|CI665100
genomic: TCTGGGGTGCCATACAACATGACACTCATCAACTGCCTCCTCTCTGCATGgtaatcttct ... aattgcgaagGTACGGGCTGCCGTTCGTGTCCCCAAACAACATCC
EST: TCTGGGGTGCCATACAACATGACACTCATCAACTGCCTCCTCTCTGCATG GTACGGGCTGCCGTTCGTGTCCCEST: gi|33799249|gb|CF325482.1|CF325482
genomic: TCTGGGGTGCCATACAACATGACACTCATCAACTGCCTCCTCTCTGCATGgtaatcttct ... aattgcgaagGTACGGGCTGCCGTTCGTGTCCC
EST: TCTGGGGTGCCATACAACATGACACTCATCAACTGCCTCCTCTCTGCATG GTACGGGCTGCCGTTCGTGTCCCCAAACAACATCCTGGTGTCGACGATCAAEST: gi|29662554|gb|CB658829.1|CB658829
genomic: TCTGGGGTGCCATACAACATGACACTCATCAACTGCCTCCTCTCTGCATGgtaatcttct ... aattgcgaagGTACGGGCTGCCGTTCGTGTCCCCAAACAACATCCTGGTGTCGACGATCAA
EST: TCTGGGGTGCCATACAACATGACACTCATCAACTGCCTCCTCTCTGCATG GTACGGGCTGCCGTTCGTGTCCCCAAACAACATCCTGGTGTCGACGATCAAEST: gi|29629891|gb|CB634900.1|CB634900
genomic: TCTGGGGTGCCATACAACATGACACTCATCAACTGCCTCCTCTCTGCATGgtaatcttct ... aattgcgaagGTACGGGCTGCCGTTCGTGTCCCCAAACAACATCCTGGTGTCGACGATCAA
EST: TCTGGGGTGCCATACAACATGACACTCATCAACTGCCTCCTCTCTGCATG GTACGGGCTGCCGTTCGTGTCCCCAAACAACATCCTGGTGTCGACGATCAAEST: gi|88335261|gb|CI650226.1|CI650226
genomic: TCTGGGGTGCCATACAACATGACACTCATCAACTGCCTCCTCTCTGCATGgtaatcttct ... aattgcgaagGTACGGGCTGCCGTTCGTGTCCCCAAACAACATCCTGGTGTCGACGATCAA
EST: TCTGGGGTGCCATACAACATGACACTCATCAACTGCCTCCTCTCTGCATG GTACGGGCTGCCGTTCGEST: gi|29657893|gb|CB654168.1|CB654168
genomic: TCTGGGGTGCCATACAACATGACACTCATCAACTGCCTCCTCTCTGCATGgtaatcttct ... aattgcgaagGTACGGGCTGCCGTTCG
EST: TCTGGGGTGCCATACAACATGACACTCATCAACTGCCTCCTCTCTGCATG GTACGGGCTGCCGTTCGTGTCCCCAAACAACATCCTGGTGTCGACGATCAA
genomic: TCTGGGGTGCCATACAACATGACACTCATCAACTGCCTCCTCTCTGCATGgtaatcttct ... aattgcgaagGTACGGGCTGCCGTTCGTGTCCCCAAACAACATCCTGGTGTCGACGATCAA
gattaaaccctgcacacggtttaacgctgccgatgccttgtgttgaattgcgaagGTACGGGCTGCCGTTCGTGTCCCCAAACAACATCCTGGTGTCGACGATCAACGGCGCCGGCGCGGTGATCGAGACGGCGTACGTGGTGGTGTTCCTCGTG
gtttaac putative branch site (score: 67)
ttgaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atttagtttgatttcaaacaaattcgctccgaaattttggcagaagattaaaccctgcacacggtttaacgctgccgatgccttgtgttgaattgcgaagGTACGGGCTGCCGTTCGTGTCCCCAAACAACATCCTGGTGTCGACGATCAACGGCGCCGGCGCGGTGATCGAGACGGCGTACGTGGTGGTGTTCCTCGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - -aaacaaa
- - - - - - - - - - - - - - - - - - - -gcagaag
- - - - - - - - - - - - - - - - - - - - - - - - - - ccctgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cgctgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgccttg