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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattctgtgccttccctttagatctgttgtttttcatgttcacggaaacactttctcaatcataacggtgattgctcttcactcttttatgtagGCCGAACTTGTTCACCGAGTTGAGAAGGATCTCATTAGTATTATGCATGGGGTATCTATCA

Basic information

species Oryza sativa
transcript LOC_Os05g28010.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88223765|gb|CI223614.1|CI223614
EST:     CAATGAGGGACGCACGCAGGCGGCGTTTCCGCAGGGAGCCTGATTTGAAT                         GCCGAACTTGTTCACCGAGTTGAGAAGGATCTCATTAGTATTATGCATGGG
genomic: CAATGAGGGACGCACGCAGGCGGCGTTTCCGCAGGGAGCCTGATTTGAATgtattctgtg ... ttttatgtagGCCGAACTTGTTCACCGAGTTGAGAAGGATCTCATTAGTATTATGCATGGG
EST: gi|88977292|gb|CI025029.1|CI025029
EST:     CAATGAGGGACGCACGCAGGCGGCGTTTCCGCAGGGAGCCTGATTTGAAT                         GCCGAACTTGTTCACCGAGTTGAGAAGGATCTCATTAGTATTATGCATGGG
genomic: CAATGAGGGACGCACGCAGGCGGCGTTTCCGCAGGGAGCCTGATTTGAATgtattctgtg ... ttttatgtagGCCGAACTTGTTCACCGAGTTGAGAAGGATCTCATTAGTATTATGCATGGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcacggaaacactttctcaatcataacggtgattgctcttcactcttttatgtagGCCGAACTTGTTCACCGAGTTGAGAAGGATCTCATTAGTATTATGCATGGGGTATCTATCA
                    tcataac  putative branch site (score: 2)
                                ttgctcttcactcttt  putative PPT
                                             ttttatgta  TA-rich tract