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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatttgatttcactgggatcttgcggaagatggcaaaaaaaatttcagctgcttttcattaattcctttgttttcattggcttaatgtagGACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGCGCTATCCGCAATGACCCAAGGATCAACTGGCTCTGCAAGCCTGTGCACA

Basic information

species Oryza sativa
transcript LOC_Os05g19370.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g19370.1 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G034794_T03 (Zea mays), 3'ss of exon 1
gtatatttgatttcactgggatcttgcggaagatggcaaaaaaaatttcagctgctttt-cattaattcc----tttgttttcattggcttaatgtagGACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGCGCTATCCGCAATGACCCAAGGATCAACTGGCTCTGCAAGCCTGTGCACA
||||  || |||    || |  |||    |||||  ||  | || ||||| |    |    | | || ||     | | | |  ||     |    ||||   |||||||||||||||||||||||| ||||| ||||| || ||||   | ||||||||||| ||||||||||||||||| ||||| ||||||||||
gtatgcttaattgagttgag--ctta-acaagatatcatgagaattttcatccttgtcagtactgatgccacatctggctcttgttactggacaacagGATAGCACCTACAAGTACTTTGAGATCATTCTTGTTGATGTGGCCCACACTACCATCCGCAATGATCCAAGGATCAACTGGCTATGCAATCCTGTGCACA

upper sequence: LOC_Os05g19370.1 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G024354_T01 (Zea mays), 3'ss of exon 3
gtatatttgatttcactggga----tcttgcggaagatggcaaaaaaaatttcagctgc------ttttcattaattcctt--tgttttcat-tggcttaatgtagGACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGCGCTATCCGCAATGACCCAAGGATCAACTGGCTCTGCAAGCCTGTGCACA
||| ||  ||||  |    ||    || |    ||     | |      ||  | |||       ||||   ||||| | |    |   ||| |  | ||    ||||    |||||||||||||| ||||||||||||||||| ||||| ||||  || |||   |  ||||| |||||||||||||| ||||| ||||||||||
gtacatcggattgtaacatgaacactcctctttaaacatactagcttgtttatatctgtcaaattttttttctaattgcctgacatgcccatatctcctatcacagGATAGTACCTACAAGTACTTCGAGATCATCCTTGTGGACGTTGCCCACAAAGCCATCAAAACCGACCCGAGGATCAACTGGCTATGCAACCCTGTGCACA

upper sequence: LOC_Os05g19370.1 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G180724_T01 (Zea mays), 3'ss of exon 3
---------gtatatttgatttcactgggatcttgcggaagatggcaaaaaaaatttcagc-tgcttttcattaattcctttgttttcattggcttaatg-tagGACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGCGCTATCCGCAATGACCCAAGGATCAACTGGCTCTGCAAGCCTGTGCACA
           || ||  |||   | | | |  |    ||||| |||  | || ||||| | |  ||   | | || ||||   |     |  || ||    ||||   ||||||||||||||| ||||||||||| || ||||| ||||||| ||| |||||||| |||||||| ||||||||||| ||||| ||||||||||
gtatacttgaaatcttgaattgtgccgagcttata-acaagatagcatgagaattttcatcctagttagtactgatgccttatctccttgttactgaacaacagGATAGCACCTACAAGTACTTCGAGATCATCCTGGTTGATGTGGCTCACACCGCCATCCGCAACGACCCAAGAATCAACTGGCTATGCAATCCTGTGCACA

upper sequence: LOC_Os05g19370.1 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G084757_T02 (Zea mays), 3'ss of exon 2
gtatatttgatttcactgggatcttgcggaagatggcaaaaaaaatttcagc-tgcttttcattaattcctt----tgttttcattggcttaatgtagGACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGCGCTATCCGCAATGACCCAAGGATCAACTGGCTCTGCAAGCCTGTGCACA
||||| |||| || | | |    |     ||||| |||  |  | ||||| | |  ||   | | || ||||     | | |  ||     |    ||||   ||||||||||||||||||||||||||| || ||||| || ||||  || |||||||| |||||||| ||||||||||| ||||| ||||||||||
gtatacttgaattgagtcgagattataacaagatagcatgaggattttcatcctagttagtactgatgccttatctcgctcttgttactgaacaacagGATAGCACCTACAAGTACTTTGAGATCATCCTGGTTGATGTGGCCCACACTGCCATCCGCAACGACCCAAGAATCAACTGGCTATGCAATCCTGTGCACA

upper sequence: LOC_Os05g19370.1 (Oryza sativa), 3'ss of exon 3
lower sequence: GLYMA17G15230.1 (Glycine max), 3'ss of exon 3
gtatatttgatttcactgggatcttgcggaagatggcaaaaaaaatttcagctgcttttcattaattcctttgttttcattggcttaatgtagGACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGCGCTATCCGCAATGACCCAAGGATCAACTGGCTCTGCAAGCCTGTGCACA
|||| ||  |  ||||    ||  |    ||  |||  |  |   |     ||   ||    | ||||  ||||| |    |  ||  || |||||||||| ||||| || |||||| |||| || ||||||||||| ||||  ||| |  | ||||| ||||| ||||||||||||||||| || || || |
gtatgtt-aacatcac----attgttgaaaacctggttatgagt-tgctgactttgttggtctgattctattgttat----gtgttgttgcagGACTCCACTTACAAATATTTTGAGGTCATTCTGGTGGATGTTGCCCACACTGCTGTAAGAAATGATCCAAGAATCAACTGGCTCTGCAATCCAGTCCATA

upper sequence: LOC_Os05g19370.1 (Oryza sativa), 3'ss of exon 3
lower sequence: GLYMA05G04870.1 (Glycine max), 3'ss of exon 3
gtatatttgatttcactgggatcttgcggaagatggcaaaaaaaatttcagctgcttttcattaattcctttgttttcattggcttaatgtagGACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGCGCTATCCGCAATGACCCAAGGATCAACTGGCTCTGCAAGCCTGTGCACA
|||| ||   |||   | |      | | ||  |||  | |  |||| | |     ||  | | ||||  ||||| |    |  ||  |  ||||||| || ||||| || |||||| |||| || ||||||||||| ||||||||| |  | ||||| ||||| ||||||||||||||||| || || || |
gtatgttatctttgcattgttgaaagtgaaacctgg--atatgaattgctgactggttggactgattctattgttat----gtgttgttacagGACTCGACTTACAAATATTTTGAGGTCATTCTGGTGGATGTTGCCCACAGCGCTGTTAGAAATGATCCAAGAATCAACTGGCTCTGCAACCCAGTCCATA

upper sequence: LOC_Os05g19370.1 (Oryza sativa), 3'ss of exon 3
lower sequence: AT4G17390.1 (Arabidopsis thaliana), 3'ss of exon 3
--gtatatttgatttcactgggatcttgcggaagatggca----aaaaaaatttcagctgcttttcattaattcctt--tgttttcattggcttaatgt---agGACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGCGCTATCCGCAATGACCCAAGGATCAACTGGCTCTGCAAGCCTGTGCACA
   |  ||   | |    |  | |  |       ||| ||      |||  | | |   |  |   || || |   |  || |||  ||  ||   | |   ||||||| |||||||||||||  ||||| |||||||| ||   ||| ||||  ||  |||| ||||| ||||||||||||||| ||||||| ||||||||||
gtatgcatcacactgtttttagttactagttgctatgccatcctgtaaatgtgttaatagtatggaatcaagtgagtaatggtttggttctctggttttctcagGACTCTACCTACAAGTACTACGAGATTATCCTTGTAGACCCTGCACACAATGCCGTCCGAAATGATCCAAGGATCAACTGGATCTGCAACCCTGTGCACA

upper sequence: LOC_Os05g19370.1 (Oryza sativa), 3'ss of exon 3
lower sequence: Vv16s0013g02020.t01 (Vitis vinifera), 3'ss of exon 3
--gtatatttgatttc--actgggatcttgcggaagatggcaaaaaaaatttcagctgct-tttcatt---aattcctttgttttcattggcttaatgtagGACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGCGCTATCCGCAATGACCCAAGGATCAACTGGCTCTGCAAGCCTGTGCACA
    ||  |  || ||  ||| | ||   ||     |       || || |||| ||  | || ||||   |||  ||      |   |    |  | ||||| ||||| ||||| |||| |||| | ||| | || |||| ||||||||  |||||||| || |||||||| ||||||||| ||||||||||||| ||||
cttcatgctaaatctcttacttgaattaagcttcctaatcttttaataaattcaccttttgttccattttaaatgtctcaaaccttgattttgttgt-tagGATTCCACTTACAAATACTATGAGGTAATCTTGGTTGATGCTGCTCACAATGCTATCCGGAACGACCCAAGAATCAACTGGATCTGCAAGCCTGTCCACA

upper sequence: LOC_Os05g19370.1 (Oryza sativa), 3'ss of exon 3
lower sequence: Vv00s0551g00020.t01 (Vitis vinifera), 3'ss of exon 3
-------gtatatttgatttcactgggat--cttgcggaagatggcaaaaaaaatttcagctgcttttcattaattcctttgttttcattggc---------------ttaatgtagGACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGCGCTATCCGCAATGACCCAAGGATCAACTGGCTCTGCAAGCCTGTGCACA
       || |  ||   |||| ||  ||   |||    |    |    ||   |||    |   | |  ||     |  |  |  ||||                  || ||| |||| || || |||||||||| |||||| |||||||| |||| |||||||| | | ||||| ||||||||||| ||||| ||| | ||||| ||||||||||
gtttgtagtgtgattccattcaatgatatgatttgtcctatccagttgtaatgttttgctttctatattgttttacacactactgccattaatgataaaacgtttctgttgatgcagGATTCAACTTACAAGTACTATGAGATAATCCTTGTTGATGCTGCTCACAACACCATCCGAAATGACCCAAGAATCAATTGGATATGCAAACCTGTGCACA

upper sequence: LOC_Os05g19370.1 (Oryza sativa), 3'ss of exon 3
lower sequence: Vv15s0021g02480.t01 (Vitis vinifera), 3'ss of exon 3
---gtatat-ttgatttcactgggatcttgcggaagatggcaaaaaaa---atttcagctgcttttcattaattcctttgttttcattggcttaatgtagGACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGCGCTATCCGCAATGACCCAAGGATCAACTGGCTCTGCAAGCCTGTGCACA
    |   | ||  |||||     || |    || | ||||| | | |   || | |||| ||  ||  ||  |  ||| | |  |     |  ||  |||| || || ||||| |||| |||||| ||||| || |||| ||| || |  || || || ||||| ||||||||||||||| ||||||||||||||||||
tcaattcgtctttttttcatatatatatatatgatgctggcacatacacatatgtgagctcctagtcggtagctaatttctctgaaaattttccattcagGATTCTACATACAAATACTATGAGATAATCCTAGTTGATGCTGCCCATAATGCAATTCGAAATGATCCAAGGATCAACTGGATCTGCAAGCCTGTGCACA

upper sequence: LOC_Os05g19370.1 (Oryza sativa), 3'ss of exon 3
lower sequence: PP1S68_114V6.1 (Physcomitrella patens), 3'ss of exon 3
-gtatatttgatttcactgggatcttgcggaagatggcaaaaaaaatttcagctgcttttcattaattcctttgttttcatt------ggct--taatgtagGACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGCGCTATCCGCAATGACCCAAGGATCAACTGGCTCTGCAAGCCTGTGCACA
  |      |||||||||   |  |||  | ||      |  |   |||| | |  |   |   | | || | |  || | |      || |  |  || ||||||| |||||||||||||||||||| ||||| || ||   |   ||    | ||| ||||| |||||||||||||||||| |    || || || ||||
actgccagcgatttcactt--aatttgttgtagggctttatcattgtttcgggtattgcactccagtaccgtggaattgaatcaggaaggttgcttgtgcagGACTCAACCTACAAGTACTTTGAGATTATCCTAGTTGACCCTCAACATGCAGTTATTCGCAAGGACCCAAGGATCAACTGGATTGTGAACCCCGTCCACA

upper sequence: LOC_Os05g19370.1 (Oryza sativa), 3'ss of exon 3
lower sequence: EFJ27946 (Selaginella moellendorffii), 3'ss of exon 3
gtatatttgatttcactgggatcttgcggaagatggcaaaaaaaatttcagctgctttt--cattaattcctttgttttcattggcttaatgtagGACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGCGCTATCCGCAATGACCCAAGGATCAACTGGCTCTGCAAGCCTGTGCACA
                                 |      | |   ||| | | |||    |  |||  |  | |    | |||| ||     ||||||| || |||||||||||||||||||||||  | ||       |||| ||| || ||||| |||||||||||||||||| ||||| |||| || ||||
--------------------------------gtactgctagactcttccgattcttccagctctaaaactgtggagaactttggattc---cagGACTCGACTTACAAGTACTTTGAGATCATCCTCATCGACCCAATGCACACCGCGATTCGCAAGGACCCAAGGATCAACTGGATCTGCCAGCCGGTTCACA

upper sequence: LOC_Os05g19370.1 (Oryza sativa), 3'ss of exon 3
lower sequence: EFJ36722 (Selaginella moellendorffii), 3'ss of exon 3
gtatatttgatttcactgggatcttgcggaagatggcaaaaaaaatttcagctgctttt--cattaattcctttgttttcattggcttaatgtagGACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGCGCTATCCGCAATGACCCAAGGATCAACTGGCTCTGCAAGCCTGTGCACA
                                 |      | |   ||| | | |||    |  |||| |  | |    | |||| ||     ||||||| || |||||||||||||||||||||||  | ||       |||| ||| || ||||| |||||||||||||||||| ||||| |||| || ||||
--------------------------------gtactgctagactcttccgattcttgcagctctaatactgtggagaactttggattc---cagGACTCAACTTACAAGTACTTTGAGATCATCCTCATCGACCCAATGCACACCGCGATTCGCAAGGACCCAAGGATCAACTGGATCTGCCAGCCGGTTCACA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86506860|gb|CI149493.1|CI149493
EST:     GACGCAAGCTGGGTGGACTCAGGGTGCTCAACTCCTACTGGGTGAATGAG                         GACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGC
genomic: GACGCAAGCTGGGTGGACTCAGGGTGCTCAACTCCTACTGGGTGAATGAGgtatatttga ... cttaatgtagGACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGC
EST: gi|86254353|gb|CI059080.1|CI059080
EST:     GACGCAAGCTGGGTGGACTCAGGGTGCTCAACTCCTACTGGGTGAATGAG                         GACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGC
genomic: GACGCAAGCTGGGTGGACTCAGGGTGCTCAACTCCTACTGGGTGAATGAGgtatatttga ... cttaatgtagGACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGC
EST: gi|15851744|gb|BI800020.1|BI800020
EST:     GACGCAAGCTGGGTGGACTCAGGGTGCTCAACTCCTACTGGGTGAATGAG                         GACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGC
genomic: GACGCAAGCTGGGTGGACTCAGGGTGCTCAACTCCTACTGGGTGAATGAGgtatatttga ... cttaatgtagGACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGC
EST: gi|88956502|gb|CI092747.1|CI092747
EST:     GACGCAAGCTGGGTGGACTCAGGGTGCTCAACTCCTACTGGGTGAATGAG                         GACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGC
genomic: GACGCAAGCTGGGTGGACTCAGGGTGCTCAACTCCTACTGGGTGAATGAGgtatatttga ... cttaatgtagGACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGC
EST: gi|27576894|gb|CA999588.1|CA999588
EST:     GACGCAAGCTGGGTGGACTCAGGGTGCTCAACTCCTACTGGGTGAATGAG                         GACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGC
genomic: GACGCAAGCTGGGTGGACTCAGGGTGCTCAACTCCTACTGGGTGAATGAGgtatatttga ... cttaatgtagGACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGC
EST: gi|86507398|gb|CI150031.1|CI150031
EST:     GACGCAAGCTGGGTGGACTCAGGGTGCTCAACTCCTACTGGGTGAATGAG                         GACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGC
genomic: GACGCAAGCTGGGTGGACTCAGGGTGCTCAACTCCTACTGGGTGAATGAGgtatatttga ... cttaatgtagGACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGC
EST: gi|87034312|gb|CI188936.1|CI188936
EST:     GACGCAAGCTGGGTGGACTCAGGGTGCTCAACTCCTACTGGGTGAATGAG                         GACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGC
genomic: GACGCAAGCTGGGTGGACTCAGGGTGCTCAACTCCTACTGGGTGAATGAGgtatatttga ... cttaatgtagGACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGC
EST: gi|86593176|gb|CI255638.1|CI255638
EST:     GACGCAAGCTGGGTGGACTCAGGGTGCTCAACTCCTACTGGGTGAATGAG                         GACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGC
genomic: GACGCAAGCTGGGTGGACTCAGGGTGCTCAACTCCTACTGGGTGAATGAGgtatatttga ... cttaatgtagGACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGC
EST: gi|55433369|gb|CV729774.1|CV729774
EST:     GACGCAAGCTGGGTGGACTCAGGGTGCTCAACTCCTACTGGGTGAATGAG                         GACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGC
genomic: GACGCAAGCTGGGTGGACTCAGGGTGCTCAACTCCTACTGGGTGAATGAGgtatatttga ... cttaatgtagGACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGC
EST: gi|86603488|gb|CI112248.1|CI112248
EST:     GACGCAAGCTGGGTGGACTCAGGGTGCTCAACTCCTACTGGGTGAATGAG                         GACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGC
genomic: GACGCAAGCTGGGTGGACTCAGGGTGCTCAACTCCTACTGGGTGAATGAGgtatatttga ... cttaatgtagGACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGC
EST: gi|87018690|gb|CI254398.1|CI254398
EST:     GACGCAAGCTGGGTGGACTCAGGGTGCTCAACTCCTACTGGGTGAATGAG                         GACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGC
genomic: GACGCAAGCTGGGTGGACTCAGGGTGCTCAACTCCTACTGGGTGAATGAGgtatatttga ... cttaatgtagGACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGC
EST: gi|88243377|gb|CI244499.1|CI244499
EST:     GACGCAAGCTGGGTGGACTCAGGGTGCTCAACTCCTACTGGGTGAATGAG                         GACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGC
genomic: GACGCAAGCTGGGTGGACTCAGGGTGCTCAACTCCTACTGGGTGAATGAGgtatatttga ... cttaatgtagGACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGC
EST: gi|86433443|gb|CI093786.1|CI093786
EST:     GACGCAAGCTGGGTGGACTCAGGGTGCTCAACTCCTACTGGGTGAATGAG                         GACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGC
genomic: GACGCAAGCTGGGTGGACTCAGGGTGCTCAACTCCTACTGGGTGAATGAGgtatatttga ... cttaatgtagGACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGC
EST: gi|89161766|gb|CI100926.1|CI100926
EST:     GACGCAAGCTGGGTGGACTCAGGGTGCTCAACTCCTACTGGGTGAATGAG                         GACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGC
genomic: GACGCAAGCTGGGTGGACTCAGGGTGCTCAACTCCTACTGGGTGAATGAGgtatatttga ... cttaatgtagGACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGC
EST: gi|86507328|gb|CI149961.1|CI149961
EST:     GACGCAAGCTGGGTGGACTCAGGGTGCTCAACTCCTACTGGGTGAATGAG                         GACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGC
genomic: GACGCAAGCTGGGTGGACTCAGGGTGCTCAACTCCTACTGGGTGAATGAGgtatatttga ... cttaatgtagGACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGC
EST: gi|55431884|gb|CV728962.1|CV728962
EST:     GACGCAAGCTGGGTGGACTCAGGGTGCTCAACTCCTACTGGGTGAATGAG                         GACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGC
genomic: GACGCAAGCTGGGTGGACTCAGGGTGCTCAACTCCTACTGGGTGAATGAGgtatatttga ... cttaatgtagGACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGC
EST: gi|88202757|gb|CI201112.1|CI201112
EST:     GTGGACTCAGGGTGCTCAACTCCTACTGGGTGAATGAG                         GACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGC
genomic: GTGGACTCAGGGTGCTCAACTCCTACTGGGTGAATGAGgtatatttga ... cttaatgtagGACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGC
EST: gi|10930664|gb|AU160938.1|AU160938
EST:     GACGCAAGCTGGGTGGACTCAGGGTGCTCAACTCCTACTGGGTGAATGAG                         GACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGC
genomic: GACGCAAGCTGGGTGGACTCAGGGTGCTCAACTCCTACTGGGTGAATGAGgtatatttga ... cttaatgtagGACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGC
EST: gi|86602435|gb|CI264763.1|CI264763
EST:     GACGCAAGCTGGGTGGACTCAGGGTGCTCAACTCCTACTGGGTGAATGAG                         GACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGC
genomic: GACGCAAGCTGGGTGGACTCAGGGTGCTCAACTCCTACTGGGTGAATGAGgtatatttga ... cttaatgtagGACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGC
EST: gi|87034039|gb|CI187401.1|CI187401
EST:     GACGCAAGCTGGGTGGACTCAGGGTGCTCAACTCCTACTGGGTGAATGAG                         GACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGC
genomic: GACGCAAGCTGGGTGGACTCAGGGTGCTCAACTCCTACTGGGTGAATGAGgtatatttga ... cttaatgtagGACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGC
EST: gi|88240634|gb|CI239796.1|CI239796
EST:     GACGCAAGCTGGGTGGACTCAGGGTGCTCAACTCCTACTGGGTGAATGAG                         GACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGC
genomic: GACGCAAGCTGGGTGGACTCAGGGTGCTCAACTCCTACTGGGTGAATGAGgtatatttga ... cttaatgtagGACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGC
EST: gi|88903333|gb|CI088871.1|CI088871
EST:     ACTGGGTGAATGAG                         GACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGC
genomic: ACTGGGTGAATGAGgtatatttga ... cttaatgtagGACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGC
EST: gi|86254468|gb|CI059195.1|CI059195
EST:     GACGCAAGCTGGGTGGACTCAGGGTGCTCAACTCCTACTGGGTGAATGAG                         GACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGC
genomic: GACGCAAGCTGGGTGGACTCAGGGTGCTCAACTCCTACTGGGTGAATGAGgtatatttga ... cttaatgtagGACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGC
EST: gi|25798204|gb|CA754173.1|CA754173
EST:     GACGCAAGCTGGGTGGACTCAGGGTGCTCAACTCCTACTGGGTGAATGAG                         GACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGC
genomic: GACGCAAGCTGGGTGGACTCAGGGTGCTCAACTCCTACTGGGTGAATGAGgtatatttga ... cttaatgtagGACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGC
EST: gi|88237029|gb|CI236878.1|CI236878
EST:     GACGCAAGCTGGGTGGACTCAGGGTGCTCAACTCCTACTGGGTGAATGAG                         GACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGC
genomic: GACGCAAGCTGGGTGGACTCAGGGTGCTCAACTCCTACTGGGTGAATGAGgtatatttga ... cttaatgtagGACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGC
EST: gi|58686451|gb|CK075138.1|CK075138
EST:     GACGCAAGCTGGGTGGACTCAGGGTGCTCAACTCCTACTGGGTGAATGAG                         GACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGC
genomic: GACGCAAGCTGGGTGGACTCAGGGTGCTCAACTCCTACTGGGTGAATGAGgtatatttga ... cttaatgtagGACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGC
EST: gi|86823151|gb|CI254038.1|CI254038
EST:     GACGCAAGCTGGGTGGACTCAGGGTGCTCAACTCCTACTGGGTGAATGAG                         GACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGC
genomic: GACGCAAGCTGGGTGGACTCAGGGTGCTCAACTCCTACTGGGTGAATGAGgtatatttga ... cttaatgtagGACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGC
EST: gi|87028558|gb|CI265957.1|CI265957
EST:     GACGCAAGCTGGGTGGACTCAGGGTGCTCAACTCCTACTGGGTGAATGAG                         GACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGC
genomic: GACGCAAGCTGGGTGGACTCAGGGTGCTCAACTCCTACTGGGTGAATGAGgtatatttga ... cttaatgtagGACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGC
EST: gi|88238510|gb|CI238359.1|CI238359
EST:     GACGCAAGCTGGGTGGACTCAGGGTGCTCAACTCCTACTGGGTGAATGAG                         GACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGC
genomic: GACGCAAGCTGGGTGGACTCAGGGTGCTCAACTCCTACTGGGTGAATGAGgtatatttga ... cttaatgtagGACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGC
EST: gi|5004067|gb|AU069216.1|AU069216
EST:     GACGCAAGCTGGGTGGACTCAGGGTGCTCAACTCCTACTGGGTGAATGAG                         GACTCCACCTACAAGTACTTTGAGATCATCCTTGTGAATGTTGCTCACAGC
genomic: GACGCAAGCTGGGTGGACTCAGGGTGCTCAACTCCTACTGGGTGAATGAGgtatatttga ... cttaatgtagGACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGC
EST: gi|86509832|gb|CI152465.1|CI152465
EST:     GACGCAAGCTGGGTGGACTCAGGGTGCTCAACTCCTACTGGGTGAATGAG                         GACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGC
genomic: GACGCAAGCTGGGTGGACTCAGGGTGCTCAACTCCTACTGGGTGAATGAGgtatatttga ... cttaatgtagGACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGC
EST: gi|86523935|gb|CI164141.1|CI164141
EST:     GACGCAAGCTGGGTGGACTCAGGGTGCTCAACTCCTACTGGGTGAATGAG                         GACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGC
genomic: GACGCAAGCTGGGTGGACTCAGGGTGCTCAACTCCTACTGGGTGAATGAGgtatatttga ... cttaatgtagGACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGC
EST: gi|86257867|gb|CI064220.1|CI064220
EST:     GACGCAAGCTGGGTGGACTCAGGGTGCTCAACTCCTACTGGGTGAATGAG                         GACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGC
genomic: GACGCAAGCTGGGTGGACTCAGGGTGCTCAACTCCTACTGGGTGAATGAGgtatatttga ... cttaatgtagGACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGC
EST: gi|86905166|gb|CI283130.1|CI283130
EST:     GACGCAAGCTGGGTGGACTCAGGGTGCTCAACTCCTACTGGGTGAATGAG                         GACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGC
genomic: GACGCAAGCTGGGTGGACTCAGGGTGCTCAACTCCTACTGGGTGAATGAGgtatatttga ... cttaatgtagGACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGC
EST: gi|25807207|gb|CA763168.1|CA763168
EST:     GACGCAAGCTGGGTGGACTCAGGGTGCTCAACTCCTACTGGGTGAATGAG                         GACTCCACCTACAAGCACTTTGAGATCATCCTTGTGGATGTTGCTCACAGC
genomic: GACGCAAGCTGGGTGGACTCAGGGTGCTCAACTCCTACTGGGTGAATGAGgtatatttga ... cttaatgtagGACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGC
EST: gi|86529673|gb|CI169879.1|CI169879
EST:     GACGCAAGCTGGGTGGACTCAGGGTGCTCAACTCCTACTGGGTGAATGAG                         GACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGC
genomic: GACGCAAGCTGGGTGGACTCAGGGTGCTCAACTCCTACTGGGTGAATGAGgtatatttga ... cttaatgtagGACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGC
EST: gi|88214542|gb|CI214391.1|CI214391
EST:     GACGCAAGCTGGGTGGACTCAGGGTGCTCAACTCCTACTGGGTGAATGAG                         GACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGC
genomic: GACGCAAGCTGGGTGGACTCAGGGTGCTCAACTCCTACTGGGTGAATGAGgtatatttga ... cttaatgtagGACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGC
EST: gi|88206146|gb|CI205995.1|CI205995
EST:     GACGCAAGCTGGGTGGACTCAGGGTGCTCAACTCCTACTGGGTGAATGAG                         GACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGC
genomic: GACGCAAGCTGGGTGGACTCAGGGTGCTCAACTCCTACTGGGTGAATGAGgtatatttga ... cttaatgtagGACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGC
EST: gi|86522156|gb|CI162362.1|CI162362
EST:     GACGCAAGCTGGGTGGACTCAGGGTGCTCAACTCCTACTGGGTGAATGAG                         GACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGC
genomic: GACGCAAGCTGGGTGGACTCAGGGTGCTCAACTCCTACTGGGTGAATGAGgtatatttga ... cttaatgtagGACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGC
EST: gi|86852186|gb|CI319121.1|CI319121
EST:     ACGCAAGGCTGGGTGGACTCAGGGTGCTCAACTCCTACTGGGTGAATGAG                         CACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATTTTG-TCACAGC
genomic: ACGCAA-GCTGGGTGGACTCAGGGTGCTCAACTCCTACTGGGTGAATGAGgtatatttga ... cttaatgtagGACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGC
EST: gi|87022459|gb|CI267596.1|CI267596
EST:     CGCAAGCTGGGTGGACTCAGGGTGCTCAACTCCTACTGGGTGAATGAG                         GACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGC
genomic: CGCAAGCTGGGTGGACTCAGGGTGCTCAACTCCTACTGGGTGAATGAGgtatatttga ... cttaatgtagGACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGC
EST: gi|86509957|gb|CI152590.1|CI152590
EST:     GACGCAAGCTGGGTGGACTCAGGGTGCTCAACTCCTACTGGGTGAATGAG                         GACTTCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGC
genomic: GACGCAAGCTGGGTGGACTCAGGGTGCTCAACTCCTACTGGGTGAATGAGgtatatttga ... cttaatgtagGACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGC
EST: gi|88203225|gb|CI203074.1|CI203074
EST:     GACTCAGGGTGCTCAACTCCTACTGGGTGAATGAG                         GACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGC
genomic: GACTCAGGGTGCTCAACTCCTACTGGGTGAATGAGgtatatttga ... cttaatgtagGACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGC
EST: gi|55430973|gb|CV728491.1|CV728491
EST:     GACGCAAGCTGGGTGGACTCAGGGTGCTCAACTCCTACTGAGTGAATGAG                         GACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGC
genomic: GACGCAAGCTGGGTGGACTCAGGGTGCTCAACTCCTACTGGGTGAATGAGgtatatttga ... cttaatgtagGACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGC
EST: gi|86596266|gb|CI268566.1|CI268566
EST:     GACGCAAGCTGGGTGGACTCAGGGTGCTCAACTCCTACTGGGTGAATGAG                         GACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGC
genomic: GACGCAAGCTGGGTGGACTCAGGGTGCTCAACTCCTACTGGGTGAATGAGgtatatttga ... cttaatgtagGACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGC
EST: gi|33803604|gb|CF327677.1|CF327677
EST:     GACGCAAGCTGGGTGGACTCAGGGTGCTCAACTCCTACTGGGTGAATGAG                         GACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGC
genomic: GACGCAAGCTGGGTGGACTCAGGGTGCTCAACTCCTACTGGGTGAATGAGgtatatttga ... cttaatgtagGACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGC
EST: gi|86415598|gb|CI029609.1|CI029609
EST:     GACGCAAGCTGGGTGGACTCAGGGTGCTCAACTCCTACTGGGTGAATGAG                         GACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGC
genomic: GACGCAAGCTGGGTGGACTCAGGGTGCTCAACTCCTACTGGGTGAATGAGgtatatttga ... cttaatgtagGACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGC
EST: gi|86508600|gb|CI151233.1|CI151233
EST:     GACGCAAGCTGGGTGGACTCAGGGTGCTCAACTCCTACTGGGTGAATGAG                         GACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGC
genomic: GACGCAAGCTGGGTGGACTCAGGGTGCTCAACTCCTACTGGGTGAATGAGgtatatttga ... cttaatgtagGACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGC
EST: gi|88239646|gb|CI238808.1|CI238808
EST:     GACGCAAGCTGGGTGGACTCAGGGTGCTCAACTCCTACTGGGTGAATGAG                         GACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGC
genomic: GACGCAAGCTGGGTGGACTCAGGGTGCTCAACTCCTACTGGGTGAATGAGgtatatttga ... cttaatgtagGACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGC
EST: gi|88239629|gb|CI238791.1|CI238791
EST:     GACGCAAGCTGGGTGGACTCAGGGTGCTCAACTCCTACTGGGTGAATGAG                         GACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGC
genomic: GACGCAAGCTGGGTGGACTCAGGGTGCTCAACTCCTACTGGGTGAATGAGgtatatttga ... cttaatgtagGACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGC
EST: gi|86511375|gb|CI154008.1|CI154008
EST:     GACGCAAGCTGGGTGGACTCAGGGTGCTCAACTCCTACTGGGTGAATGAG                         GACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGC
genomic: GACGCAAGCTGGGTGGACTCAGGGTGCTCAACTCCTACTGGGTGAATGAGgtatatttga ... cttaatgtagGACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGC
EST: gi|88243386|gb|CI244508.1|CI244508
EST:     GACGCAAGCTGGGTGGACTCAGGGTGCTCAACTCCTACTGGGTGAATGAG                         GACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGC
genomic: GACGCAAGCTGGGTGGACTCAGGGTGCTCAACTCCTACTGGGTGAATGAGgtatatttga ... cttaatgtagGACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGC
EST: gi|86508431|gb|CI151064.1|CI151064
EST:     GACGCAAGCTGGGTGGACTCAGGGTGCTCAACTCCTACTGGGTGAATGAG                         GACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGC
genomic: GACGCAAGCTGGGTGGACTCAGGGTGCTCAACTCCTACTGGGTGAATGAGgtatatttga ... cttaatgtagGACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGC
EST: gi|86505510|gb|CI148143.1|CI148143
EST:     GACGCAAGCTGGGTGGACTCAGGGTGCTCAACTCCTACTGGGTGAATGAG                         GACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGC
genomic: GACGCAAGCTGGGTGGACTCAGGGTGCTCAACTCCTACTGGGTGAATGAGgtatatttga ... cttaatgtagGACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 75 (downstream exon)
Score: 99

CCAGCTCAAGTTCCAGAGGAACAAGAGGTCAGTTGCTGAGGAGAGAGCTGGACGCAAGCTGGGTGGACTCAGGGTGCTCAACTCCTACTGGGTGAATGAGgtatatttga ... cttaatgtagGACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGCGCTATCCGCAATGACCCAAGGATCAACTGGCTCTGCAAGCCTGTGCACA




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaaaaatttcagctgcttttcattaattcctttgttttcattggcttaatgtagGACTCCACCTACAAGTACTTTGAGATCATCCTTGTGGATGTTGCTCACAGCGCTATCCGCAATGACCCAAGGATCAACTGGCTCTGCAAGCCTGTGCACA
                 ttttcattaatt  TA-rich tract