1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gttatttcatattcttaaaatattttggaaagatttatgtttttttaataattccccactaattttccatagatcagTAACCATCTGGAGCTGATAAAGCCAAACCTGAAAGACGAAATTGAGAAGCAGAAGAAAGATGCTGAGCTTGCAGCTGCTGTCTTTGACACAGATATTGAA
species | Oryza sativa |
transcript | LOC_Os05g15890.3 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTCTGTGCCCCTTCTGTCTTGTTCTTCCTTGCCTTGGGAAGCTTCAGCAG AEST: gi|29626915|gb|CB631926.1|CB631926
genomic: CTCTGTGCCCCTTCTGTCTTGTTCTTCCTTGCCTTGGGAAGCTTCAGCAGgttatttcat ... catagatcag-
EST: CTCTGTGCCCCTTCTGTCTTGTTCTTCCTTGCCTTGGGAAGCTTCAGCAG AEST: gi|27548508|gb|CA766438.2|CA766438
genomic: CTCTGTGCCCCTTCTGTCTTGTTCTTCCTTGCCTTGGGAAGCTTCAGCAGgttatttcat ... catagatcag-
EST: CTCTGTGCCCCTTCTGTCTTGTTCTTCCTTGCCTTGGGAAGCTTCAGCAG TAACCATCTGGAGCTGATAAAGCCAAACCTGAAAGACGAAATTGAGAAGCA
genomic: CTCTGTGCCCCTTCTGTCTTGTTCTTCCTTGCCTTGGGAAGCTTCAGCAGgttatttcat ... catagatcagTAACCATCTGGAGCTGATAAAGCCAAACCTGAAAGACGAAATTGAGAAGCA
ttttggaaagatttatgtttttttaataattccccactaattttccatagatcagTAACCATCTGGAGCTGATAAAGCCAAACCTGAAAGACGAAATTGAGAAGCAGAAGAAAGATGCTGAGCTTGCAGCTGCTGTCTTTGACACAGATATTGAA
cactaat putative branch site (score: 2)
ttttccat CT-rich tract
aaagatttatgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttatttcatattcttaaaatattttggaaagatttatgtttttttaataattccccactaattttccatagatcagTAACCATCTGGAGCTGATAAAGCCAAACCTGAAAGACGAAATTGAGAAGCAGAAGAAAGATGCTGAGCTTGCAGCTGCTGTCTTTGACACAGATATTGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT