1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtatgtcttctcgttggtgaagtgataaagctactgttcattttattcattgtttaatgatatagactttttttttgcagGGTTAGATATACACTTATGTTAGCAAACACTTGGATCTTTTCGTGAACTATAAGGATGGTTGTGACTTGCGAAGGGTCTTGCTTC
species | Oryza sativa |
transcript | LOC_Os05g15360.7 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTACTATGGTGCTTCTATGTCTTAATTCAGTTAAGTTTTCACACTAGAAG GGTTAGATATACACTTATGTTAGCAAACACTTGGATCTTTTCGTGAACTATEST: gi|86602141|gb|CI260611.1|CI260611
genomic: TTACTATGGTGCTTCTATGTCTTAATTCAGTTAAGTTTTCACACTAGAAGgtatgtcttc ... ttttttgcagGGTTAGATATACACTTATGTTAGCAAACACTTGGATCTTTTCGTGAACTAT
EST: TTACTATGGTGCTTCTATGTCTTAATTCAGTTAAGTTTTCACACTAGAAG GGTTAGATATACACTTATGTTAGCAAACACTTGGATCTTTTCGTGAACTAT
genomic: TTACTATGGTGCTTCTATGTCTTAATTCAGTTAAGTTTTCACACTAGAAGgtatgtcttc ... ttttttgcagGGTTAGATATACACTTATGTTAGCAAACACTTGGATCTTTTCGTGAACTAT
taaagctactgttcattttattcattgtttaatgatatagactttttttttgcagGGTTAGATATACACTTATGTTAGCAAACACTTGGATCTTTTCGTGAACTATAAGGATGGTTGTGACTTGCGAAGGGTCTTGCTTC
gtttaat putative branch site (score: 4)
ctttttttttgc putative PPT
attttattcattgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtcttctcgttggtgaagtgataaagctactgttcattttattcattgtttaatgatatagactttttttttgcagGGTTAGATATACACTTATGTTAGCAAACACTTGGATCTTTTCGTGAACTATAAGGATGGTTGTGACTTGCGAAGGGTCTTGCTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG