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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtggcgtggcggcggcgccgtaggattcggacgaacaccttgctgacatgacctgatcttgctgcagGACGAGCTGCTCTGGGCGGCGGCGTGGCTGTTCGAGGCGACGGAGGACAGGTCCTACCTGGAGTACCTCGCCGGCAACGGCGAGGCGCTGGGCGGGACGG

Basic information

species Oryza sativa
transcript LOC_Os05g12150.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g12150.1 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G143747_T01 (Zea mays), 3'ss of exon 3
------------------------gtaagtggcgtggcggcggcgccgtaggattcggacgaacaccttgctgacatgacctg-atcttgctgcagGACGAGCTGCTCTGGGCGGCGGCGTGGCTGTTCGAGGCGACGGAGGACAGGTCCTACCTGGAGTACCTCGCCGGCAACGGCGAGGCGCTGGGCGGGACGG
                        | |    ||    |  |  |   || |   |     ||  |||| | |  | |  | |   |  | |||||||||||||| || ||||||||||| ||||||| ||||||||| |||||  ||| |||||| |||||| | ||| | || ||||| || || ||||| ||||
gtaagtggacatgctcatctgcaagcacactgcccttcaacttcaatgtcgtggt-acctgactacctggttcccttcccgtacgtggttctgcagGACGAGCTTCTGTGGGCGGCGGCATGGCTGTACGAGGCGACAGAGGAAGGGTGCTACCTCGAGTACATGGCCCGGAATGGCGACGCTCTCGGCGGCACGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cggcgccgtaggattcggacgaacaccttgctgacatgacctgatcttgctgcagGACGAGCTGCTCTGGGCGGCGGCGTGGCTGTTCGAGGCGACGGAGGACAGGTCCTACCTGGAGTACCTCGCCGGCAACGGCGAGGCGCTGGGCGGGACGG
                                            tcttgct  CT-rich tract