1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtaagtgatggtgccatttcttcctgccacaggtttgcaagttcctatcttttaccctttttttgtttgtagGGTTACTACCGACGTGGAGCGGCATATCTTGCCATGGGTAAGTTCAAGGAAGCTCTGAAGGATTTTCAACAG
species | Oryza sativa |
transcript | LOC_Os05g11550.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CAGTGCAAGATGCTTCAAAAGCAATTGAAATTGATGCTAGATACTCAAAA GGTTACTACCGACGTGGAGCGGCATATCEST: gi|58687860|gb|CK076547.1|CK076547
genomic: CAGTGCAAGATGCTTCAAAAGCAATTGAAATTGATGCTAGATACTCAAAAgtaagtgatg ... ttgtttgtagGGTTACTACCGACGTGGAGCGGCATATC
EST: CAGTGCAAGATGCTTCAAAAGCAATTGAAATTGATGCTAGATACTCAAAA GGTTACTACCGACGTGGAGCGGCATATCTTGCCATGGGTAAGTTCAAGGAAEST: gi|58672770|gb|CK061456.1|CK061456
genomic: CAGTGCAAGATGCTTCAAAAGCAATTGAAATTGATGCTAGATACTCAAAAgtaagtgatg ... ttgtttgtagGGTTACTACCGACGTGGAGCGGCATATCTTGCCATGGGTAAGTTCAAGGAA
EST: CAGTGCAAGATGCTTCAAAAGCAATTGAAATTGATGCTAGATACTCAAAA GGTTACTACCGACGTGGAGCGGCATATCTTGCCATGGGTAAGTTCAAGGEST: gi|29630243|gb|CB635252.1|CB635252
genomic: CAGTGCAAGATGCTTCAAAAGCAATTGAAATTGATGCTAGATACTCAAAAgtaagtgatg ... ttgtttgtagGGTTACTACCGACGTGGAGCGGCATATCTTGCCATGGGTAAGTTCAAGG
EST: CAGTGCAAGATGCTTCAAAAGCAATTGAAATTGATGCTAGATACTCAAAA GGTTACTACCGACGTGGAGCGGCATATCTTGCCATGGGTAAGTTCAAGGAAEST: gi|58671706|gb|CK060392.1|CK060392
genomic: CAGTGCAAGATGCTTCAAAAGCAATTGAAATTGATGCTAGATACTCAAAAgtaagtgatg ... ttgtttgtagGGTTACTACCGACGTGGAGCGGCATATCTTGCCATGGGTAAGTTCAAGGAA
EST: CAGTGCAAGATGCTTCAAAAGCAATTGAAATTGATGCTAGATACTCAAAA GGTTACTACCGACGTGGAGCGGCATATCTTGCCATGGGTAAGTTCAAGGAAEST: gi|29676952|gb|CB673227.1|CB673227
genomic: CAGTGCAAGATGCTTCAAAAGCAATTGAAATTGATGCTAGATACTCAAAAgtaagtgatg ... ttgtttgtagGGTTACTACCGACGTGGAGCGGCATATCTTGCCATGGGTAAGTTCAAGGAA
EST: CAGTGCAAGATGCTTCAAAAGCAATTGAAATTGATGCTAGATACTCAAAA GGTTACTACCGACGTGGAGCGGCATATCTTGCCATGGGTAAGTTCAAGGAAEST: gi|29681334|gb|CB677609.1|CB677609
genomic: CAGTGCAAGATGCTTCAAAAGCAATTGAAATTGATGCTAGATACTCAAAAgtaagtgatg ... ttgtttgtagGGTTACTACCGACGTGGAGCGGCATATCTTGCCATGGGTAAGTTCAAGGAA
EST: CAGTGCAAGATGCTTCAAAAGCAATTGAAATTGATGCTAGATACTCAAAA GGTTACTACCGACGTGGAGCGGCATATCTTGCCATGGGTAAGTTCAAGGAAEST: gi|66920389|gb|CX107237.1|CX107237
genomic: CAGTGCAAGATGCTTCAAAAGCAATTGAAATTGATGCTAGATACTCAAAAgtaagtgatg ... ttgtttgtagGGTTACTACCGACGTGGAGCGGCATATCTTGCCATGGGTAAGTTCAAGGAA
EST: CAGTGCAAGATGCTTCAAAAGCAATTGAAATTGATGCTAGATACTCAAAA GGTTACTACCGACGTGGAGCGGCATATCTTGCCATGGGTAAGTTCAAGGAA
genomic: CAGTGCAAGATGCTTCAAAAGCAATTGAAATTGATGCTAGATACTCAAAAgtaagtgatg ... ttgtttgtagGGTTACTACCGACGTGGAGCGGCATATCTTGCCATGGGTAAGTTCAAGGAA
ttcttcctgccacaggtttgcaagttcctatcttttaccctttttttgtttgtagGGTTACTACCGACGTGGAGCGGCATATCTTGCCATGGGTAAGTTCAAGGAAGCTCTGAAGGATTTTCAACAG
ttcctatcttttaccc CT-rich tract
tttttttgtttgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtgatggtgccatttcttcctgccacaggtttgcaagttcctatcttttaccctttttttgtttgtagGGTTACTACCGACGTGGAGCGGCATATCTTGCCATGGGTAAGTTCAAGGAAGCTCTGAAGGATTTTCAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG