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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcatgtctacaaaatcacattgcaagcaattagatagcactgaataatgctaaaaatgctctctttcagGTCATGGAAAATGGGGAGATAACTCAGGAGGGAACTTACAGTGAGCTTCTGCAATCCGGCACGGCATTCGAACAGCTTGTGAATGCGCACAAGGACTCAA

Basic information

species Oryza sativa
transcript LOC_Os05g10730.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29679769|gb|CB676044.1|CB676044
EST:     TTCTTGTCACACATCAAGTTGAGTTCCTCTCCAAGGTTGACAAGATCCTG                         GTCATGGAAAATGGGGAGATAACTCAGGAGGGAACTTACAGTGAGCTTCTG
genomic: TTCTTGTCACACATCAAGTTGAGTTCCTCTCCAAGGTTGACAAGATCCTGgtaagcatgt ... tctctttcagGTCATGGAAAATGGGGAGATAACTCAGGAGGGAACTTACAGTGAGCTTCTG
EST: gi|86884136|gb|CI311617.1|CI311617
EST:     CACACATCAAGTTGAGTTCCTCTCCAAGGTTGACAAGATCCTG                         GTCATGGAAAATGGGGAGATAACTCAGGAGGGAACTTACAGTGAGCTTCTG
genomic: CACACATCAAGTTGAGTTCCTCTCCAAGGTTGACAAGATCCTGgtaagcatgt ... tctctttcagGTCATGGAAAATGGGGAGATAACTCAGGAGGGAACTTACAGTGAGCTTCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcacattgcaagcaattagatagcactgaataatgctaaaaatgctctctttcagGTCATGGAAAATGGGGAGATAACTCAGGAGGGAACTTACAGTGAGCTTCTGCAATCCGGCACGGCATTCGAACAGCTTGTGAATGCGCACAAGGACTCAA
                                 tgctaaa  putative branch site (score: 2)
                                          tgctctctttc  putative PPT
                            aataatgctaaaaat  TA-rich tract