1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagttaaaaggaatcccatcatcttctcgagtagcacgcaatgtctttctgatctttgtgggctttggttcttttgtatgcagATGCTGGAGGAGGAAGTGGATGTTCCGGTAGCAACTACAAATGAGACACTAAAGGATGATACTAAAATGGATACAGATGATGCACTAGGTGACCCTGCTT
species | Oryza sativa |
transcript | LOC_Os05g08840.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGAAAGCATGTCTCAACATCCATGGGATAGTCTCTATTGAATCAGCAATG ATGCTGGAGGAGGAAGTGGATGTTCCGGTAGCAACTACAAATGAGACACTAEST: gi|29672139|gb|CB668414.1|CB668414
genomic: TGAAAGCATGTCTCAACATCCATGGGATAGTCTCTATTGAATCAGCAATGgtaagttaaa ... ttgtatgcagATGCTGGAGGAGGAAGTGGATGTTCCGGTAGCAACTACAAATGAGACACTA
EST: TGAAAGCATGTCTCAACATCCATGGGATAGTCTCTATTGAATCAGCAATG ATGCTGGAGGAGGAAGTGGATGTTCCGGTAGCAACTACAAATGAGACACTAEST: gi|58684854|gb|CK073541.1|CK073541
genomic: TGAAAGCATGTCTCAACATCCATGGGATAGTCTCTATTGAATCAGCAATGgtaagttaaa ... ttgtatgcagATGCTGGAGGAGGAAGTGGATGTTCCGGTAGCAACTACAAATGAGACACTA
EST: TGAAAGCATGTCTCAACATCCATGGGATAGTCTCTATTGAATCAGCAATG ATGCTGGAGGAGGAAGTGGATGTTCCGGTAGCAACTACAAATGAGACACTA
genomic: TGAAAGCATGTCTCAACATCCATGGGATAGTCTCTATTGAATCAGCAATGgtaagttaaa ... ttgtatgcagATGCTGGAGGAGGAAGTGGATGTTCCGGTAGCAACTACAAATGAGACACTA
gagtagcacgcaatgtctttctgatctttgtgggctttggttcttttgtatgcagATGCTGGAGGAGGAAGTGGATGTTCCGGTAGCAACTACAAATGAGACACTAAAGGATGATACTAAAATGGATACAGATGATGCACTAGGTGACCCTGCTT
ttctgat putative branch site (score: 18)
ttcttttgt putative PPT
ttttgtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttaaaaggaatcccatcatcttctcgagtagcacgcaatgtctttctgatctttgtgggctttggttcttttgtatgcagATGCTGGAGGAGGAAGTGGATGTTCCGGTAGCAACTACAAATGAGACACTAAAGGATGATACTAAAATGGATACAGATGATGCACTAGGTGACCCTGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG