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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttttggttgataagcatagggataagcgaaaagatgagggctttaatttggttgcgttgatactgacattggtgagcaaaacaaatttatgcatatgcagCATGCGGTGGGGTACATGAGCGGGGGGCAATTCTACGGGGCGAAGGCGAGCCTGAACGTGTGGCCGGCGAAGGTGGCGTCGCCGGCGGAGTTCAGCCTCT

Basic information

species Oryza sativa
transcript LOC_Os05g07764.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g07764.1 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G131650_T04 (Zea mays), 3'ss of exon 3
ttttggttgataagcatagggataagcgaaaagatgagggctttaatttggttgcgttgatactgacattggtgagcaaaacaaatttatgcatatgcagCATGCGGTGGGGTACATGAGCGGGGGGCAATTCTACGGGGCGAAGGCGAGCCTGAACGTGTGGCCGGCGAAGGTGGCGTCGCCGGCGGAGTTCAGCCTCT
   |||     |     |    |   |||   ||      | ||||       | |    |    || |   ||||||     |     |   | ||||||| |||||||||||| ||| ||| ||||| |||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
caatggccagcacatgcacatgttgtcgactcgactgcatcgttaaacaatgggagaacgtcagtacgtcactgagcagctagacggcctctgtttgcagCACGCGGTGGGGTACGTGACCGGCGGGCAGTTCTACGGCGCCAAGGCGAGCCTGAACGTGTGGCCGGCGCAGGTGGCGTCGCCGGCGGAGTTCAGCCTCT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttggttgcgttgatactgacattggtgagcaaaacaaatttatgcatatgcagCATGCGGTGGGGTACATGAGCGGGGGGCAATTCTACGGGGCGAAGGCGAGCCTGAACGTGTGGCCGGCGAAGGTGGCGTCGCCGGCGGAGTTCAGCCTCT
               tactgac  putative branch site (score: 1)
                                aaaacaaatttat  TA-rich tract