1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtgagaatacatgcttctttgttgattactcaatcactacattttctgtcgtaaagaacaatgaccctaatgttaaacttactgtttagGTATGAAGGTCAACGTACCGCGGAAGCCCTTGCAGAATATGTTAACTCTGAAGCAG
species | Oryza sativa |
transcript | LOC_Os05g06430.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGGTACCCCACAATCCAATGGTTCCCCAAAGGTTCCTTGGAGCCCAAGAA GTATGAAGGTCAACGTACCGCGGAAGCCCTTGCAGAATATGTTAACTCTGAEST: gi|58662435|gb|CK051121.1|CK051121
genomic: GGGTACCCCACAATCCAATGGTTCCCCAAAGGTTCCTTGGAGCCCAAGAAgtgagaatac ... tactgtttagGTATGAAGGTCAACGTACCGCGGAAGCCCTTGCAGAATATGTTAACTCTGA
EST: GGGTACCCCACAATCCAATGGTTCCCCAAAGGTTCCTTGGAGCCCAAGAA GTATGAAGGTCAACGTACCGCGGAAGCCCTTGCAGAATATGTTAACTCTGAEST: gi|58608597|gb|CK036630.1|CK036630
genomic: GGGTACCCCACAATCCAATGGTTCCCCAAAGGTTCCTTGGAGCCCAAGAAgtgagaatac ... tactgtttagGTATGAAGGTCAACGTACCGCGGAAGCCCTTGCAGAATATGTTAACTCTGA
EST: GGGTACCCCACAATCCAATGGTTCCCCAAAGGTTCCTTGGAGCCCAAGAA GTATGAAGGTCAACGTACCGCGGAAGCCCTTGCAGAATATGTTAACTCTGAEST: gi|58684543|gb|CK073230.1|CK073230
genomic: GGGTACCCCACAATCCAATGGTTCCCCAAAGGTTCCTTGGAGCCCAAGAAgtgagaatac ... tactgtttagGTATGAAGGTCAACGTACCGCGGAAGCCCTTGCAGAATATGTTAACTCTGA
EST: GGGTACCCCACAATCCAATGGTTCCCCAAAGGTTCCTTGGAGCCCAAGAA GTATGAAGGTCAACGTACCGCGGAAGCCCTTGCAGAATATGTTAACTCTGAEST: gi|58657295|gb|CK045975.1|CK045975
genomic: GGGTACCCCACAATCCAATGGTTCCCCAAAGGTTCCTTGGAGCCCAAGAAgtgagaatac ... tactgtttagGTATGAAGGTCAACGTACCGCGGAAGCCCTTGCAGAATATGTTAACTCTGA
EST: GGGTACCCCACAATCCAATGGTTCCCCAAAGGTTCCTTGGAGCCCAAGAA GTATGAAGGTCAACGTACCGCGGAAGCCCTTGCAGAATATGTTAACTCTGAEST: gi|27577315|gb|CB000010.1|CB000010
genomic: GGGTACCCCACAATCCAATGGTTCCCCAAAGGTTCCTTGGAGCCCAAGAAgtgagaatac ... tactgtttagGTATGAAGGTCAACGTACCGCGGAAGCCCTTGCAGAATATGTTAACTCTGA
EST: CCCCACAATCCAATGGTTCCCCGAAGGTTCCTTGGAGCCCAACCA TTATGAAGGTCAACGTACCGCGGAAGCCCTTGCAGAATATGTTAACTCTGAEST: gi|27577494|gb|CB000189.1|CB000189
genomic: CCCCACAATCCAATGGTTCCCCAAAGGTTCCTTGGAGCCCAAGAAgtgagaatac ... tactgtttagGTATGAAGGTCAACGTACCGCGGAAGCCCTTGCAGAATATGTTAACTCTGA
EST: AATCCAATGGTTCCCCAAAGGTTCCTTGGAGCCCAAGAC TTATGAAGGTCAACGTACCGCGGAAGCCCTTGCAGAATATGTTAACTCTGAEST: gi|58653719|gb|CK042399.1|CK042399
genomic: AATCCAATGGTTCCCCAAAGGTTCCTTGGAGCCCAAGAAgtgagaatac ... tactgtttagGTATGAAGGTCAACGTACCGCGGAAGCCCTTGCAGAATATGTTAACTCTGA
EST: GGGTACCCCACAATCCAATGGTTCCCCAAAGGTTCCTTGGAGCCCAAGAA GTATGAAGGTCAACGTACCGCGGAAGCCCTTGCAGAATATGTTAACTCTGAEST: gi|27576419|gb|CA999113.1|CA999113
genomic: GGGTACCCCACAATCCAATGGTTCCCCAAAGGTTCCTTGGAGCCCAAGAAgtgagaatac ... tactgtttagGTATGAAGGTCAACGTACCGCGGAAGCCCTTGCAGAATATGTTAACTCTGA
EST: CCACAATCCAATGGTTCCCCAAAGGTTCCTTGGAGCCCAAGAA GTATGAAGGTCAACGTACCGCGGAAGCCCTTGCAAAATATGTTAACTCTGAEST: gi|58653948|gb|CK042628.1|CK042628
genomic: CCACAATCCAATGGTTCCCCAAAGGTTCCTTGGAGCCCAAGAAgtgagaatac ... tactgtttagGTATGAAGGTCAACGTACCGCGGAAGCCCTTGCAGAATATGTTAACTCTGA
EST: TGGAGCCCAAGAA GTATGAAGGTCAACGTACCGCGGAAGCCCTTGCAGAATATGTTAACTCTGAEST: gi|58659841|gb|CK048521.1|CK048521
genomic: TGGAGCCCAAGAAgtgagaatac ... tactgtttagGTATGAAGGTCAACGTACCGCGGAAGCCCTTGCAGAATATGTTAACTCTGA
EST: GGGTACCCCACAATCCAATGGTTCCCCAAAGGTTCCTTGGAGCCCAAGAA GTATGAAGGTCAACGTACCGCGGAAGCCCTTGCAGAATATGTTAACTCTGAEST: gi|12622813|gb|AU173026.1|AU173026
genomic: GGGTACCCCACAATCCAATGGTTCCCCAAAGGTTCCTTGGAGCCCAAGAAgtgagaatac ... tactgtttagGTATGAAGGTCAACGTACCGCGGAAGCCCTTGCAGAATATGTTAACTCTGA
EST: GGGTACCCCACAATCCAATGGTTCCCCAAAGGTTCCTTGGAGCCCAAGAA GTATGAAGGTCAACGTACCGCGGAAGCCCTTGCAGAATATGTTAACTCTGAEST: gi|88692194|gb|CI735769.1|CI735769
genomic: GGGTACCCCACAATCCAATGGTTCCCCAAAGGTTCCTTGGAGCCCAAGAAgtgagaatac ... tactgtttagGTATGAAGGTCAACGTACCGCGGAAGCCCTTGCAGAATATGTTAACTCTGA
EST: GGGTACCCCANAATCCAATGGTTCCC-AAAGGTCCCTTGGAGCCCAAGAA GTATGAAGGTCAACEST: gi|58654869|gb|CK043549.1|CK043549
genomic: GGGTACCCCACAATCCAATGGTTCCCCAAAGGTTCCTTGGAGCCCAAGAAgtgagaatac ... tactgtttagGTATGAAGGTCAAC
EST: GGGTACCCCACAATCCAATGGTTCCCCAAAGGTTCCTTGGAGCCCAAGAA GTATGAAGGTCAACGTACCGCGGAAGCCCTTGCAGAATATGTTAACTCTGA
genomic: GGGTACCCCACAATCCAATGGTTCCCCAAAGGTTCCTTGGAGCCCAAGAAgtgagaatac ... tactgtttagGTATGAAGGTCAACGTACCGCGGAAGCCCTTGCAGAATATGTTAACTCTGA
cactacattttctgtcgtaaagaacaatgaccctaatgttaaacttactgtttagGTATGAAGGTCAACGTACCGCGGAAGCCCTTGCAGAATATGTTAACTCTGAAGCAG
aacttac putative branch site (score: 55)
taatgttaaactta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagaatacatgcttctttgttgattactcaatcactacattttctgtcgtaaagaacaatgaccctaatgttaaacttactgtttagGTATGAAGGTCAACGTACCGCGGAAGCCCTTGCAGAATATGTTAACTCTGAAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC