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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactgttctgtctactgtcattgtaacatgccatgaatgagccattacaattggacaaaacaatctctgctcaatacagttatgaacttgtgatgtgtctgatgtttgtttatagGTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG

Basic information

species Oryza sativa
transcript LOC_Os05g03480.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58652483|gb|CK041163.1|CK041163
EST:     CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTG                         GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACC
genomic: CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTGgtactgttct ... ttgtttatagGTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACC
EST: gi|29657680|gb|CB653955.1|CB653955
EST:     CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTG                         GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
genomic: CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTGgtactgttct ... ttgtttatagGTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
EST: gi|29641738|gb|CB646745.1|CB646745
EST:     CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTG                         GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
genomic: CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTGgtactgttct ... ttgtttatagGTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
EST: gi|29664861|gb|CB661136.1|CB661136
EST:     CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTG                         GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
genomic: CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTGgtactgttct ... ttgtttatagGTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
EST: gi|58655315|gb|CK043995.1|CK043995
EST:     CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTG                         GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
genomic: CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTGgtactgttct ... ttgtttatagGTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
EST: gi|58595349|gb|CF993657.1|CF993657
EST:     CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTG                         GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
genomic: CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTGgtactgttct ... ttgtttatagGTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
EST: gi|58675201|gb|CK063888.1|CK063888
EST:     CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTG                         GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
genomic: CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTGgtactgttct ... ttgtttatagGTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
EST: gi|29642660|gb|CB647667.1|CB647667
EST:     CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTG                         GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
genomic: CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTGgtactgttct ... ttgtttatagGTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
EST: gi|29669233|gb|CB665508.1|CB665508
EST:     CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTG                         GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
genomic: CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTGgtactgttct ... ttgtttatagGTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
EST: gi|29664110|gb|CB660385.1|CB660385
EST:     CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTG                         GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
genomic: CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTGgtactgttct ... ttgtttatagGTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
EST: gi|58593722|gb|CF992030.1|CF992030
EST:     GGTCGGGGGTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTG                         GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
genomic: GGTC-GGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTGgtactgttct ... ttgtttatagGTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
EST: gi|29662792|gb|CB659067.1|CB659067
EST:     CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTG                         GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTA-C----
genomic: CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTGgtactgttct ... ttgtttatagGTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
EST: gi|25777970|gb|CA752720.1|CA752720
EST:     CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTG                         GTCCGGCATGGCAGCCCTGCC-AAAAGCTCAAGTACTTACCAAAAG
genomic: CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTGgtactgttct ... ttgtttatagGTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAA-G
EST: gi|29670746|gb|CB667021.1|CB667021
EST:     CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTG                         GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
genomic: CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTGgtactgttct ... ttgtttatagGTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
EST: gi|29658881|gb|CB655156.1|CB655156
EST:     CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTG                         GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
genomic: CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTGgtactgttct ... ttgtttatagGTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
EST: gi|58666277|gb|CK054963.1|CK054963
EST:     CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTG                         GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
genomic: CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTGgtactgttct ... ttgtttatagGTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
EST: gi|58588211|gb|CF986519.1|CF986519
EST:     CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTG                         GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
genomic: CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTGgtactgttct ... ttgtttatagGTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
EST: gi|29614820|gb|CB619833.1|CB619833
EST:     CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTG                         GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
genomic: CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTGgtactgttct ... ttgtttatagGTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
EST: gi|29623029|gb|CB628040.1|CB628040
EST:     CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTG                         GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
genomic: CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTGgtactgttct ... ttgtttatagGTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
EST: gi|29664203|gb|CB660478.1|CB660478
EST:     CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTG                         GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
genomic: CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTGgtactgttct ... ttgtttatagGTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
EST: gi|29682069|gb|CB678344.1|CB678344
EST:     CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTG                         GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
genomic: CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTGgtactgttct ... ttgtttatagGTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
EST: gi|29637231|gb|CB642240.1|CB642240
EST:     CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTG                         GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
genomic: CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTGgtactgttct ... ttgtttatagGTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
EST: gi|29643545|gb|CB648552.1|CB648552
EST:     CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTG                         GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
genomic: CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTGgtactgttct ... ttgtttatagGTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
EST: gi|29681462|gb|CB677737.1|CB677737
EST:     CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTG                         GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
genomic: CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTGgtactgttct ... ttgtttatagGTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
EST: gi|29672429|gb|CB668704.1|CB668704
EST:     CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTG                         GTCCGGCATGGCAGCCCTGCCCAAAAGCTCGAGTACTTACCAAAG
genomic: CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTGgtactgttct ... ttgtttatagGTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
EST: gi|29661037|gb|CB657312.1|CB657312
EST:     CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTG                         GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
genomic: CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTGgtactgttct ... ttgtttatagGTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
EST: gi|29659705|gb|CB655980.1|CB655980
EST:     CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTG                         GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
genomic: CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTGgtactgttct ... ttgtttatagGTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
EST: gi|25800055|gb|CA756016.1|CA756016
EST:     CGGTCGGGCTGTCTTACGGCGCTCACTCCCACCTCTGCATTAACCAGCTG                         GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCANAG
genomic: CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTGgtactgttct ... ttgtttatagGTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
EST: gi|29664640|gb|CB660915.1|CB660915
EST:     CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTG                         GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
genomic: CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTGgtactgttct ... ttgtttatagGTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
EST: gi|29642007|gb|CB647014.1|CB647014
EST:     CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTG                         GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
genomic: CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTGgtactgttct ... ttgtttatagGTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
EST: gi|29674356|gb|CB670631.1|CB670631
EST:     CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTG                         GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
genomic: CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTGgtactgttct ... ttgtttatagGTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
EST: gi|29663795|gb|CB660070.1|CB660070
EST:     CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTG                         GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
genomic: CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTGgtactgttct ... ttgtttatagGTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
EST: gi|29661262|gb|CB657537.1|CB657537
EST:     CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTG                         GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
genomic: CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTGgtactgttct ... ttgtttatagGTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
EST: gi|29637190|gb|CB642199.1|CB642199
EST:     CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTG                         GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
genomic: CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTGgtactgttct ... ttgtttatagGTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
EST: gi|29637530|gb|CB642539.1|CB642539
EST:     CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTG                         GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
genomic: CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTGgtactgttct ... ttgtttatagGTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
EST: gi|29673822|gb|CB670097.1|CB670097
EST:     CGGGCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTG                         GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
genomic: CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTGgtactgttct ... ttgtttatagGTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
EST: gi|29661524|gb|CB657799.1|CB657799
EST:     CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTG                         GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
genomic: CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTGgtactgttct ... ttgtttatagGTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
EST: gi|29663209|gb|CB659484.1|CB659484
EST:     ATTAACCAGCTC                         GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
genomic: ATTAACCAGCTGgtactgttct ... ttgtttatagGTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
EST: gi|88314900|gb|CI609959.1|CI609959
EST:     CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTG                         GTCCGGCATGGCAGCCCTGCCC
genomic: CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTGgtactgttct ... ttgtttatagGTCCGGCATGGCAGCCCTGCCC
EST: gi|58689911|gb|CK078598.1|CK078598
EST:     CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTG                         GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
genomic: CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTGgtactgttct ... ttgtttatagGTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
EST: gi|29671620|gb|CB667895.1|CB667895
EST:     CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTG                         GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
genomic: CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTGgtactgttct ... ttgtttatagGTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
EST: gi|29661039|gb|CB657314.1|CB657314
EST:     CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTG                         GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
genomic: CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTGgtactgttct ... ttgtttatagGTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
EST: gi|29675356|gb|CB671631.1|CB671631
EST:     CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTG                         GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
genomic: CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTGgtactgttct ... ttgtttatagGTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
EST: gi|29678947|gb|CB675222.1|CB675222
EST:     CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTG                         GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
genomic: CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTGgtactgttct ... ttgtttatagGTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
EST: gi|58653569|gb|CK042249.1|CK042249
EST:     CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTG                         GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
genomic: CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTGgtactgttct ... ttgtttatagGTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
EST: gi|29642658|gb|CB647665.1|CB647665
EST:     CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTG                         GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
genomic: CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTGgtactgttct ... ttgtttatagGTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
EST: gi|29661171|gb|CB657446.1|CB657446
EST:     CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTG                         GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
genomic: CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTGgtactgttct ... ttgtttatagGTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
EST: gi|58671620|gb|CK060306.1|CK060306
EST:     CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTG                         GTCCGGCATGGCAGCCCTGCCCAAAAAGCTCAAGTACTTACCAAAG
genomic: CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTGgtactgttct ... ttgtttatagGTCCGGCATGGCAGCCCTGCCCAAAA-GCTCAAGTACTTACCAAAG
EST: gi|29680931|gb|CB677206.1|CB677206
EST:     CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTG                         GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
genomic: CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTGgtactgttct ... ttgtttatagGTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
EST: gi|29661229|gb|CB657504.1|CB657504
EST:     CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTG                         GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
genomic: CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTGgtactgttct ... ttgtttatagGTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
EST: gi|33654177|gb|CF276791.1|CF276791
EST:     CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTG                         GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
genomic: CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTGgtactgttct ... ttgtttatagGTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
EST: gi|2311971|gb|C28126.1|C28126
EST:     CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTG                         GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
genomic: CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTGgtactgttct ... ttgtttatagGTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
EST: gi|29657355|gb|CB653630.1|CB653630
EST:     CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTG                         GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
genomic: CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTGgtactgttct ... ttgtttatagGTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
EST: gi|29658317|gb|CB654592.1|CB654592
EST:     CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTG                         GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
genomic: CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTGgtactgttct ... ttgtttatagGTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
EST: gi|29672647|gb|CB668922.1|CB668922
EST:     CGGTCGGCCTGTCTTACGGTGCTCACTCCAACCTCTGCATTAACCAGCTG                         GTCCGGCATGGCAGCCCTGCCCAAAAGCTCGAGTACTTACCAAAG
genomic: CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTGgtactgttct ... ttgtttatagGTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
EST: gi|29641375|gb|CB646382.1|CB646382
EST:     CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTG                         GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
genomic: CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTGgtactgttct ... ttgtttatagGTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
EST: gi|29666865|gb|CB663140.1|CB663140
EST:     CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTG                         GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
genomic: CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTGgtactgttct ... ttgtttatagGTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
EST: gi|29664256|gb|CB660531.1|CB660531
EST:     CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTG                         GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
genomic: CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTGgtactgttct ... ttgtttatagGTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
EST: gi|29668395|gb|CB664670.1|CB664670
EST:     CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTG                         GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
genomic: CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTGgtactgttct ... ttgtttatagGTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
EST: gi|29680249|gb|CB676524.1|CB676524
EST:     CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTG                         GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
genomic: CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTGgtactgttct ... ttgtttatagGTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
EST: gi|29658029|gb|CB654304.1|CB654304
EST:     CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTG                         GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
genomic: CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTGgtactgttct ... ttgtttatagGTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
EST: gi|29665694|gb|CB661969.1|CB661969
EST:     CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTG                         GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
genomic: CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTGgtactgttct ... ttgtttatagGTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
EST: gi|29668355|gb|CB664630.1|CB664630
EST:     CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTG                         GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
genomic: CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTGgtactgttct ... ttgtttatagGTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
EST: gi|29680494|gb|CB676769.1|CB676769
EST:     CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTG                         GTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
genomic: CGGTCGGCCTGTCTTACGGCGCTCACTCCAACCTCTGCATTAACCAGCTGgtactgttct ... ttgtttatagGTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caatctctgctcaatacagttatgaacttgtgatgtgtctgatgtttgtttatagGTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG
                                    gtctgat  putative branch site (score: 4)
                                            tttgttt  CT-rich tract
                                            tttgtttata  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtactgttctgtctactgtcattgtaacatgccatgaatgagccattacaattggacaaaacaatctctgctcaatacagttatgaacttgtgatgtgtctgatgtttgtttatagGTCCGGCATGGCAGCCCTGCCCAAAAGCTCAAGTACTTACCAAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTCA