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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaggttcaattgctattctatttactctaaattgtctcgtttaatgatcatgtgttacttgtgatgtatgacatccttattaatcctctcatatctttagAACAAGTGTACCTCAAAGTGTGGAGAAAAGCTTCCAGCTTTCTCGATCAGATAGAGAAACTGTCCAGAGACAAGAATATGACCTCCAG

Basic information

species Oryza sativa
transcript LOC_Os05g03430.3
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g03430.2 (Oryza sativa), 3'ss of exon 7
lower sequence: GRMZM2G155123_T02 (Zea mays), 3'ss of exon 7
aaggttcaattgctattctattta---ctctaaattgtctcgtttaatgatcatgtgttacttgtg-atgtatgacatccttattaatcctctcatatctttagAACAAGTGTACCTCAAAGTGTGGAGAAAAGCTTCCAGCTTTCTCGATCAGATAGAGAAACTGTCCAGAGACAAGAATATGACCTCCAG
  |  | || |  | | ||||||     | || ||| |||   || ||| |  |||||| ||  || ||  |||   ||||| | || ||| |||||||| |||| ||||||||||||||| ||||||||| |  ||||| ||||| ||| ||||||||||||| || ||||||||||||||||| ||||||
--gacttaactattctgctattttagtttgtatattatctgcattgatgttactgtgttgctgatgcataaatg-tgtccttgtgaaacct-tcatatctctagAGCAAGTGTACCTCAAATTGTGGAGAAGACTTTCCAACTTTCCCGAGCAGATAGAGAAACAGTTCAGAGACAAGAATATGATCTCCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatcatgtgttacttgtgatgtatgacatccttattaatcctctcatatctttagAACAAGTGTACCTCAAAGTGTGGAGAAAAGCTTCCAGCTTTCTCGATCAGATAGAGAAACTGTCCAGAGACAAGAATATGACCTCCAG
                                tattaat  putative branch site (score: 2)
                                      tcctctcatatcttt  CT-rich tract
                               ttattaat  TA-rich tract