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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatcagatcatatttggcagtcacttcattaggcctattttttcagtggtgacttgctgtggtcacttgccttgtactttgcatttacttattattgtgttggctccacgaatgttagttttggcaaaaaatttagtgaagtggtcattctgtgcagGTGTTTGGTCCAGCATCGAAGCAGAAGGATTTGTTTGAGCAATCTATCTCACCAATAGTAAATGAGGTCCTTGAGGGCTATAATTGCACAATTTTTGCTT

Basic information

species Oryza sativa
transcript LOC_Os05g02670.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g02670.2 (Oryza sativa), 3'ss of exon 4
lower sequence: GRMZM2G024576_T01 (Zea mays), 3'ss of exon 2
gtatcagatcatatttggcagtcacttcattaggcctattttttcagtggtgacttgctgtggtcacttgccttgtactttgcatttacttattattgtgttggctccacgaatgttagttttggcaaaaaatttagtgaagtggt-cattctgtgcagGTGTTTGGTCCAGCATCGAAGCAGAAGGATTTGTTTGAGCAATCTATCTCACCAATAGTAAATGAGGTCCTTGAGGGCTATAATTGCACAATTTTTGCTT
                            ||||   |  ||| |  ||   |  ||||          ||   |  ||||| | |||||| || | |||  ||  ||  |    |||  |||||| |  | | |||||| || |  | |||| || | |||| ||||| ||| | || |||||||| ||||||||||| ||||| ||||| || |||||||||||||||||||| || || |||||||| ||||| ||||
--------------------------gtattatatcactttgtcgagcaatttcttg-----actgtttcgttcatacttagaatttacctagtcttg--tttacttaatctctgtgtgttttgacctaga-tttagttaactatttcattttgagtagGTTTTTGGCCCATCGTCCAAGCAGAAAGATTTGTTTGAACAATCCATCTCGCCGATAGTAAATGAGGTCCTTGAAGGTTACAATTGCACTATTTTCGCTT

upper sequence: LOC_Os05g02670.2 (Oryza sativa), 3'ss of exon 4
lower sequence: Vv06s0004g03810.t01 (Vitis vinifera), 3'ss of exon 3
gtatcagatcatatttggcagtcacttcattaggcctattttttcagtggtgacttgctgtggtcacttgccttgtactttgcatttacttattattgtgttggctccacgaatgttagttttggcaaaaaatttagtgaagtggtcattctgtgcagGTGTTTGGTCCAGCATCGAAGCAGAAGGATTTGTTTGAGCAATCTATCTCACCAATAGTAAATGAGGTCCTTGAGGGCTATAATTGCACAATTTTTGCTT
                                                | |  |||   |||  |     | || |   |  |||  |   |||||| |  | |    |   ||  | ||  || ||| ||   |  ||||    | |||||||| |||| ||||||||| ||||  | || ||||| |||| ||| ||| || | || |||||||||||||| || ||||||||||||||||||||||| ||||| |
------------------------------------------------gatatctttgagtgaactggaactttatggataacataaa---attattctaattgaattatctatcctcgtgatgacaacaa---tgttgaa----taattctgtgtagGTCTTTGGTCCAACATCCCAACAAAAGGACTTGTATGATCAAGCTGTGTCTCCAATAGTAAATGAAGTTCTTGAGGGCTATAATTGCACAATATTTGCCT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctccacgaatgttagttttggcaaaaaatttagtgaagtggtcattctgtgcagGTGTTTGGTCCAGCATCGAAGCAGAAGGATTTGTTTGAGCAATCTATCTCACCAATAGTAAATGAGGTCCTTGAGGGCTATAATTGCACAATTTTTGCTT
                                          tcattct  CT-rich tract
                       aaaaaatttagtgaa  TA-rich tract