1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtgagagaaaagaactgcaaaatcagtatactgataatactgtagtaattctgtttgaaaaaatcagtaacagttacgatttcgcaccagATCTTGATGTTCGACTCGGTGCACGCGAGGACCTGCCTCCACCACGCGGCGTACTACGGCCACGTCGACTGCCTGCAGGCCATCCTCGCCGCCGCGCAGA
species | Oryza sativa |
transcript | LOC_Os05g02130.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGCACGGCAAGATCGACTGCGTGCTCAAGCTCCTCCAGGCCGACGCAAAT ATCTTGATGTTCGACTCGGTGCACGCGAGGACCTGCCTCCACCACGCGGCGEST: gi|428376|gb|D24524.1|D24524
genomic: TGCACGGCAAGATCGACTGCGTGCTCAAGCTCCTCCAGGCCGACGCAAATgtgagagaaa ... ttcgcaccagATCTTGATGTTCGACTCGGTGCACGCGAGGACCTGCCTCCACCACGCGGCG
EST: TCAAGCTCCTCCAGGCCGACGCAAAT ATCTTGATGTTCGACTCGGTGCACGCGAGGACCTGCCTCCACCACGCGGCGEST: gi|88368292|gb|CI577563.1|CI577563
genomic: TCAAGCTCCTCCAGGCCGACGCAAATgtgagagaaa ... ttcgcaccagATCTTGATGTTCGACTCGGTGCACGCGAGGACCTGCCTCCACCACGCGGCG
EST: TGCACGGCAAGATCGACTGCGTGGTCAAGCTCCTCCAGGCCGAAGCAAAT ATCTTGATGTTCGACTCGGTGCACGCGAGEST: gi|87011260|gb|CI289530.1|CI289530
genomic: TGCACGGCAAGATCGACTGCGTGCTCAAGCTCCTCCAGGCCGACGCAAATgtgagagaaa ... ttcgcaccagATCTTGATGTTCGACTCGGTGCACGCGAG
EST: TGCACGGCAAGATCGACTGCGTGCTCAAGCTCCTCCAGGCCGACGCAAAT ATCTTGATGTTCGACTCGGTGCACGCGAGGACCTGCCTCCACCACGCGGCG
genomic: TGCACGGCAAGATCGACTGCGTGCTCAAGCTCCTCCAGGCCGACGCAAATgtgagagaaa ... ttcgcaccagATCTTGATGTTCGACTCGGTGCACGCGAGGACCTGCCTCCACCACGCGGCG
aatactgtagtaattctgtttgaaaaaatcagtaacagttacgatttcgcaccagATCTTGATGTTCGACTCGGTGCACGCGAGGACCTGCCTCCACCACGCGGCGTACTACGGCCACGTCGACTGCCTGCAGGCCATCCTCGCCGCCGCGCAGA
cagtaac putative branch site (score: 22)
tttgaaaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagagaaaagaactgcaaaatcagtatactgataatactgtagtaattctgtttgaaaaaatcagtaacagttacgatttcgcaccagATCTTGATGTTCGACTCGGTGCACGCGAGGACCTGCCTCCACCACGCGGCGTACTACGGCCACGTCGACTGCCTGCAGGCCATCCTCGCCGCCGCGCAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG