1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaaaacatctttgtcttgcagatggattctttgaacttgtttcttttcagctatgctgttctttaaaccagtattatcaatgacttgttggtctagctagcatagctcctttttttttcagttaattcattccttgttcatgattcgtttatgttttttcgtcatcttcatgtagCCAAGAGCATTGGTGTAAAACAGGTGGTTTTGGTTGGATCCATGGGCGGCACAGATGTCAATCACCCACTAAATAAGTTAGGAAATGCAAATATACTG
species | Oryza sativa |
transcript | LOC_Os05g01970.5 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTGGATTGGATTGGCCAGAGGAATCAAATAGATGCTG CCAAGAGCATTGGTGTAAAACAGGTGGTTTTGGTTGGATCCATGGGCGGCAEST: gi|29637203|gb|CB642212.1|CB642212
genomic: GTGGATTGGATTGGCCAGAGGAATCAAATAGATGCTGgtaaaacatc ... cttcatgtagCCAAGAGCATTGGTGTAAAACAGGTGGTTTTGGTTGGATCCATGGGCGGCA
EST: GTGGATTGGATTGGCCAGAGGAATCAAATAGATGCTG CCAAGAGCATTGGTGTAAAACAGGTGGTTTTGGTTGGATCCATGGGCGGCAEST: gi|88372139|gb|CI641774.1|CI641774
genomic: GTGGATTGGATTGGCCAGAGGAATCAAATAGATGCTGgtaaaacatc ... cttcatgtagCCAAGAGCATTGGTGTAAAACAGGTGGTTTTGGTTGGATCCATGGGCGGCA
EST: GTGGATTGGATTGGCCAGAGGAATCAAATAGATGCTG CCAAGAGCATTGGTGTAAAACAGGTGGTTTTGGTTGGATCCATGGGCGGCAEST: gi|29614613|gb|CB619626.1|CB619626
genomic: GTGGATTGGATTGGCCAGAGGAATCAAATAGATGCTGgtaaaacatc ... cttcatgtagCCAAGAGCATTGGTGTAAAACAGGTGGTTTTGGTTGGATCCATGGGCGGCA
EST: GTGGATTGGATTGGCCAGAAGAATCAAATAGATGCTG CCAAGAGCATTGGTGTAAAACAGGTGGTTTTGGTTGGATCCATGGGCGGCAEST: gi|29637365|gb|CB642374.1|CB642374
genomic: GTGGATTGGATTGGCCAGAGGAATCAAATAGATGCTGgtaaaacatc ... cttcatgtagCCAAGAGCATTGGTGTAAAACAGGTGGTTTTGGTTGGATCCATGGGCGGCA
EST: GTGGATTGGATTGGCCACAGGAATCAAATAAATGCTG CCAAGAGCATTGGTGTAAAACAGGTGGTTTTGGATGGATCCATGGGCGGCAEST: gi|84117300|gb|CD151067.1|CD151067
genomic: GTGGATTGGATTGGCCAGAGGAATCAAATAGATGCTGgtaaaacatc ... cttcatgtagCCAAGAGCATTGGTGTAAAACAGGTGGTTTTGGTTGGATCCATGGGCGGCA
EST: GTGGATTGGATTGGCCAGAAGAATCAAATAGATGCTG CCAAGAGCATTGGTGTAAAACAGGTGGTTTTGGTTGGATCCATGGGCGGCA
genomic: GTGGATTGGATTGGCCAGAGGAATCAAATAGATGCTGgtaaaacatc ... cttcatgtagCCAAGAGCATTGGTGTAAAACAGGTGGTTTTGGTTGGATCCATGGGCGGCA
gttaattcattccttgttcatgattcgtttatgttttttcgtcatcttcatgtagCCAAGAGCATTGGTGTAAAACAGGTGGTTTTGGTTGGATCCATGGGCGGCACAGATGTCAATCACCCACTAAATAAGTTAGGAAATGCAAATATACTG
agttaat putative branch site (score: 4)
ttttttcgtcatcttc putative PPT
tttatgtttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaacatctttgtcttgcagatggattctttgaacttgtttcttttcagctatgctgttctttaaaccagtattatcaatgacttgttggtctagctagcatagctcctttttttttcagttaattcattccttgttcatgattcgtttatgttttttcgtcatcttcatgtagCCAAGAGCATTGGTGTAAAACAGGTGGTTTTGGTTGGATCCATGGGCGGCACAGATGTCAATCACCCACTAAATAAGTTAGGAAATGCAAATATACTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG