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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aagctacctgcgaccccattgtgtccaggcctgaacaaacagctaactgtcgacaagtaaatgttttatttagaggagcttatgtttctctgctctgcagGTATTGTTCTTGATTCTGGTGATGGTGTCAGCCACACAGTGCCCATTTATGAAGGATATGCGCTTCCTCATGCCATTCTCCGTTTGGATCTGGCTGGTCG

Basic information

species Oryza sativa
transcript LOC_Os05g01600.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os05g01600.2 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G104017_T01 (Zea mays), 3'ss of exon 3
aagctacctgcgaccccattgtgtccaggcctgaacaa--acagctaactgtcgacaagtaaatgttttatttagaggagcttatgtttctctgctc----tgcagGTATTGTTCTTGATTCTGGTGATGGTGTCAGCCACACAGTGCCCATTTATGAAGGATATGCGCTTCCTCATGCCATTCTCCGTTTGGATCTGGCTGGTCG
    || ||  |   | | | |  ||| |  | || ||    ||  ||   | |     || | | | |   |  ||   | | | ||| | | |||    | ||||||||||||| ||||||||||||||||| ||||| || ||||||||||||||||||||||| ||||||||||| ||||| ||| ||||||| ||||||||
--agtatctcag---ctagtata-ccaagaataaataacggaagtcaaaattagttgtttacacggtgtgactgaagtttcctctttttttattctcaatctacagGTATTGTTCTCGATTCTGGTGATGGTGTGAGCCATACTGTGCCCATTTATGAAGGATATGCCCTTCCTCATGCTATTCTACGTCTGGATCTTGCTGGTCG

upper sequence: LOC_Os05g01600.2 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G067985_T13 (Zea mays), 3'ss of exon 3
--------aagctacctgcgaccccattgtgtccaggcctgaacaaacagctaactgtcgacaagtaaatgttttatttagaggagcttatgtttctctgctctgcagGTATTGTTCTTGATTCTGGTGATGGTGTCAGCCACACAGTGCCCATTTATGAAGGATATGCGCTTCCTCATGCCATTCTCCGTTTGGATCTGGCTGGTCG
        | |  |  |   ||   ||||| | || |      |  |    |     |   |   |   |   |||| | |       | |  ||      ||| |||||||||| || || |||||||||||||| |||||||| ||||||||||| ||||||||||| ||||||||||||||||| ||||||||||| ||||||||
aataaaatatggaagtta-aacttaattgtttacatggtgtggctgaagtttcctctttttcttttttttcccttatcttg-------tttactttctcaatctacagGTATTGTACTCGACTCTGGTGATGGTGTGAGCCACACTGTGCCCATTTACGAAGGATATGCCCTTCCTCATGCCATTCTTCGTTTGGATCTTGCTGGTCG

upper sequence: LOC_Os05g01600.2 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G067985_T05 (Zea mays), 3'ss of exon 4
aagctacctgcgaccccattgtgtccaggcctgaacaaacagctaactgtcgacaagtaaatgttttatttagaggagcttatgtttctctgctctgcagGTATTGTTCTTGATTCTGGTGATGGTGTCAGCCACACAGTGCCCATTTATGAAGGATATGCGCTTCCTCATGCCATTCTCCGTTTGGATCTGGCTGGTCG-----------
                                                                                                              ||| |||||||||||||| |||||||| ||||||||||| ||||||||||| ||||||||||||||||| ||||||||||| ||||||||           
--------------------------------------------------------------------------------------------------------------tGACTCTGGTGATGGTGTGAGCCACACTGTGCCCATTTACGAAGGATATGCCCTTCCTCATGCCATTCTTCGTTTGGATCTTGCTGGTCGGGACCTCACAG

upper sequence: LOC_Os05g01600.2 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G110378_T03 (Zea mays), 3'ss of exon 4
aagctacctgcgaccccattgtgtccaggcctgaacaaacagc-taactgtcgacaagtaaatgttttatttagaggagcttatgtttctctgctctgcagGTATTGTTCTTGATTCTGGTGATGGTGTCAGCCACACAGTGCCCATTTATGAAGGATATGCGCTTCCTCATGCCATTCTCCGTTTGGATCTGGCTGGTCG
||  ||      |  |     |    |    || |     | | ||| |||  ||| |    ||  | || |    |   || | |||      ||| ||||||||||||| || |||||||||||||| || ||||| ||||||||||||||||||||||| ||||| ||||||||||| ||| ||||||| ||||||||
aaaataagcataatacatcaataataaacaatggaagttaaacataattgtttacatg-gtgtggctgatgtttccgcttttttattttctcaatctacagGTATTGTTCTCGACTCTGGTGATGGTGTGAGTCACACTGTGCCCATTTATGAAGGATATGCCCTTCCCCATGCCATTCTTCGTCTGGATCTTGCTGGTCG

upper sequence: LOC_Os05g01600.2 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G067985_T03 (Zea mays), 3'ss of exon 2
aagctacctgcgaccccattgtgtccaggcctga--acaaacagctaactgtcgacaagtaa-atgttttatttagaggagcttatgtttctctgc---tctgcagGTATTGTTCTT-GATTCTGGTGATGGTGTCAGCCACACAGTGCCCATTTATGAAGGATATGCGCTTCCTCATGCCATTCTCCGTTTGGATCTGGCTGGTCG
           ||    | | | || ||     |  |     || |||   |  |    | | ||| | |   | | |   | | | ||| | |     ||| |||||||||||||| || |||||||||||||| |||||||| ||||||||||| ||||||||||| ||||||||||||||||| ||||||||||| ||||||| 
------aaaatgagtataatatatcaagaataaataatgggaagttaaaacttaattgtttacatggtgtggctggtgtttcctctttttttttctcaatcttcagGTATTGTTCTTTGACTCTGGTGATGGTGTGAGCCACACTGTGCCCATTTACGAAGGATATGCCCTTCCTCATGCCATTCTTCGTTTGGATCTTGCTGGTC-

upper sequence: LOC_Os05g01600.2 (Oryza sativa), 3'ss of exon 3
lower sequence: GLYMA15G05570.1 (Glycine max), 3'ss of exon 3
--aagctacctgcgaccccattgtgtccaggcctgaacaaacagctaactgtcgacaagtaaatgttttatttagaggagcttatgtttctctgctctgcagGTATTGTTCTTGATTCTGGTGATGGTGTCAGCCACACAGTGCCCATTTATGAAGGATATGCGCTTCCTCATGCCATTCTCCGTTTGGATCTGGCTGGTCG
       || | | |        | | || || |    | |    | |    |  ||  | | |   |||||     |   |  | | |   |  |   |||||||||| |||||||||||||||||||| |||||||| |||||||| |||||||| ||||| ||||||||||| ||||| || ||||| || ||||| ||
attccacacgtacaagagtgggatatacatgcatttctacattaattatgaccagca--ttatttccttattggtttgtcttgttatgttggtattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACGGTGCCCATATATGAAGGGTATGCTCTTCCTCATGCAATTCTTCGGTTGGACCTTGCTGGCCG

upper sequence: LOC_Os05g01600.2 (Oryza sativa), 3'ss of exon 3
lower sequence: GLYMA08G19420.1 (Glycine max), 3'ss of exon 3
aagctacctgcgaccccattgtgtccaggcctgaacaaacagctaactgtcgacaagta--aatgttttatttagaggagcttat-gtttctctgctctgcagGTATTGTTCTTGATTCTGGTGATGGTGTCAGCCACACAGTGCCCATTTATGAAGGATATGCGCTTCCTCATGCCATTCTCCGTTTGGATCTGGCTGGTCG
     |  | |          | | || |  |   || |    |  ||  |||| ||||  | |   ||||||    |   || |  | |      |   |||||||||| |||||||||||||||||||| ||||||||||| ||||| |||||||| ||||| ||||||||||| ||||| || ||||| || ||||| ||
---acatatacatgagtgggatatacatgtatttccacattaattcctcacgaccagtattatttccttattttcttgtctttgttatgttggcattaaacagGTATTGTGCTTGATTCTGGTGATGGTGTGAGCCACACAGTTCCCATATATGAAGGGTATGCTCTTCCTCATGCAATTCTTCGGTTGGACCTTGCTGGCCG

upper sequence: LOC_Os05g01600.2 (Oryza sativa), 3'ss of exon 3
lower sequence: GLYMA08G15480.1 (Glycine max), 3'ss of exon 3
aagctacctgcgaccccattgtgtccaggcctgaacaaacagctaactgtcgacaagtaaatgttttatttagaggagcttatgtttctctgctctgcagGTATTGTTCTTGATTCTGGTGATGGTGTCAGCCACACAGTGCCCATTTATGAAGGATATGCGCTTCCTCATGCCATTCTCCGTTTGGATCTGGCTGGTCG
                  |||| |     | |        |   |    |  | ||  | ||  ||  ||    | | |      |||  |      ||||||||||  | || |||||||||||||| || ||||| || || || ||||| || ||||| || || |||||||| || ||||||||||| ||||||||
----------------gtttgtatatcaccatctgtcttgattcattcttttataatcacattgttctttccctgaatc----aattccttttaaaacagGTATTGTATTGGACTCTGGTGATGGTGTGAGTCACACTGTACCAATCTATGAGGGGTATGCACTCCCCCATGCCATCCTTCGTTTGGATCTCGCTGGTCG

upper sequence: LOC_Os05g01600.2 (Oryza sativa), 3'ss of exon 3
lower sequence: GLYMA05G32220.1 (Glycine max), 3'ss of exon 2
aagctacctgcgaccccattgtgtccaggcctgaacaaacagctaactgtcgacaagtaaatgttttatttagaggagcttatgtttctctgctctgcagGTATTGTTCTTGATTCTGGTGATGGTGTCAGCCACACAGTGCCCATTTATGAAGGATATGCGCTTCCTCATGCCATTCTCCGTTTGGATCTGGCTGGTCG
                  |||| |     | |        |   |    |  | ||  | ||  ||  ||    | | |      |||  | |    ||||||||||  | || |||||||||||||| || ||||| || || || ||||| || ||||| || || |||||||| || ||||||||||| || |||||
----------------gtttgtatattaccatctgtcttgattcattcttttataatcacatcattctttccctgaatc----aattcctttcaaaacagGTATTGTGTTGGACTCTGGTGATGGTGTGAGTCACACTGTACCAATCTATGAGGGGTATGCACTCCCCCATGCCATCCTTCGTTTGGATCTCGCAGGTCG

upper sequence: LOC_Os05g01600.2 (Oryza sativa), 3'ss of exon 3
lower sequence: GLYMA04G39380.2 (Glycine max), 3'ss of exon 3
aagctacctgcgaccccatt-gtgtccag--gcctgaacaaacagctaactgtcgacaagtaaatgttttatttagaggagcttatgtttctctgctctgcagGTATTGTTCTTGATTCTGGTGATGGTGTCAGCCACACAGTGCCCATTTATGAAGGATATGCGCTTCCTCATGCCATTCTCCGTTTGGATCTGGCTGGTCG
           |     ||| || ||||   |  | ||   | || |   ||||  ||  |   | |||   |    | | |  ||  || ||||     ||||||||||| | || ||||| |||||||| || ||||| ||||| || ||||| || ||||| || |||||||||||||| ||||||||||| ||||| ||
-----------gtttgtatttgtatccatctgtttcaattcatagtt--ttgtcatcacattgttctttccct----gaatcaaatactt-tctgaa--acagGTATTGTTTTGGACTCTGGCGATGGTGTTAGTCACACTGTGCCAATCTATGAGGGCTATGCACTCCCTCATGCCATTCTTCGTTTGGATCTTGCTGGCCG

upper sequence: LOC_Os05g01600.2 (Oryza sativa), 3'ss of exon 3
lower sequence: GLYMA06G15520.2 (Glycine max), 3'ss of exon 3
aagctacctgcgaccccattgtgtccaggcctgaacaaacagctaactgtcgacaagtaaatgttttatttagaggagcttatgtttctctgctctgcagGTATTGTTCTTGATTCTGGTGATGGTGTCAGCCACACAGTGCCCATTTATGAAGGATATGCGCTTCCTCATGCCATTCTCCGTTTGGATCTGGCTGGTCG
        ||  ||    ||   ||   | || ||   ||  ||   ||||  ||  |   |||| |||          | |  | | | ||     ||||||||||| | || |||||||||||||| || ||||| ||||| || ||||| || ||||| || |||||||||||||||||||||||||| ||||| ||
-----gtttgt-acttatttccatct--gtcttaattcactcct--ttgtcttcacat---tgttctatccttgaa---tcaaatctttttgaat--cagGTATTGTTTTGGACTCTGGTGATGGTGTGAGTCACACTGTGCCAATCTATGAGGGCTATGCACTCCCTCATGCCATTCTCCGTTTGGATCTTGCTGGCCG

upper sequence: LOC_Os05g01600.2 (Oryza sativa), 3'ss of exon 3
lower sequence: Vv04s0044g00580.t01 (Vitis vinifera), 3'ss of exon 4
aagctacctgcgaccccattgtgtccaggcctgaacaaacagctaactgtcgacaagtaaatgttttatttagaggagcttatgtttctctgctctgcagGTATTGTTCTTGATTCTGGTGATGGTGTCAGCCACACAGTGCCCATTTATGAAGGATATGCGCTTCCTCATGCCATTCTCCGTTTGGATCTGGCTGGTCG
         |  |    | | | |   |    |||    ||  |  || |      || | |||    |     |     ||  || |||   |    ||||||||| || ||||||||||||||||| || ||||| ||||| ||||||||||| ||||| ||||| ||||| || || ||| | || || ||||| ||
-----gttcgt-attaaaatctttttggattggaattttcatttttcttttctgttgttagtgtagcct-----gagttctaacttgctcctttgactagGTATTGTGCTGGATTCTGGTGATGGTGTGAGTCACACTGTGCCAATTTATGAAGGTTATGCACTTCCCCATGCTATCCTTCGTCTTGACCTTGCTGGACG

upper sequence: LOC_Os05g01600.2 (Oryza sativa), 3'ss of exon 3
lower sequence: Vv12s0178g00200.t01 (Vitis vinifera), 3'ss of exon 2
aagctacctgcgaccccattgtgtccaggcctgaacaaacagctaactgtcgacaagtaaatgttttatttagaggagcttatgt--ttctctgctctgc----agGTATTGTTCTTGATTCTGGTGATGGTGTCAGCCACACAGTGCCCATTTATGAAGGATATGCGCTTCCTCATGCCATTCTCCGTTTGGATCTGGCTGGTCG
     |  | | |     || |   |||   ||    ||| ||  ||| |       | |   | || |||     |  |  ||   || | || | ||     |||||||||  | ||||||||||||||||||||||| |||||||| || |||||||||||||| ||||| ||||| || || || || || || ||||||||
----aaatttcaagaattttttcctcagtattggt--aactgccgactatgattttcttatcctgttctttgttatatttactgaagttttttggtgtgtgaaaagGTATTGTCTTGGATTCTGGTGATGGTGTCAGCCATACAGTGCCAATCTATGAAGGATATGCTCTTCCACATGCAATCCTTCGATTAGACCTTGCTGGTCG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58673476|gb|CK062162.1|CK062162
EST:     CGTCGCTATCCAGGCCGTGCTTTCCCTCTATGCCAGTGGCCGTACTACTG                         GTATTGTTCTTGATTCTGGTGATGGTGTCAGCCACACAGTGCCCATTTATG
genomic: CGTCGCTATCCAGGCCGTGCTTTCCCTCTATGCCAGTGGCCGTACTACTGgtatgtatga ... tgctctgcagGTATTGTTCTTGATTCTGGTGATGGTGTCAGCCACACAGTGCCCATTTATG
EST: gi|38472546|gb|CF956678.1|CF956678
EST:     CGTCGCTATCCAGGCCGTGCTTTCCCTCTATGCCAGTGGCCGTACTACTG                         GTATTGTTCTTGATTCTGGTGATGGTGTCAGCCACACAGTGCCCATTTATG
genomic: CGTCGCTATCCAGGCCGTGCTTTCCCTCTATGCCAGTGGCCGTACTACTGgtatgtatga ... tgctctgcagGTATTGTTCTTGATTCTGGTGATGGTGTCAGCCACACAGTGCCCATTTATG
EST: gi|33658243|gb|CF280857.1|CF280857
EST:     CGTCGCTATCCAGGCCGTGCTTTCCCTCTATGCCAGTGGCCGTACTACTG                         GGTATTGTTCTTGATTCTG
genomic: CGTCGCTATCCAGGCCGTGCTTTCCCTCTATGCCAGTGGCCGTACTACTGgtatgtatga ... tgctctgcagG-TATTGTTCTTGATTCTG
EST: gi|58595519|gb|CK006047.1|CK006047
EST:     CGTCGCTATCCAGGCCGTGCTTTCCCTCTATGCCAGTGGCCGTACTACTG                         GTATTGTTCTTGATTCTGGTGATGGTGTCAGCCACACAGTGCCCATTTA
genomic: CGTCGCTATCCAGGCCGTGCTTTCCCTCTATGCCAGTGGCCGTACTACTGgtatgtatga ... tgctctgcagGTATTGTTCTTGATTCTGGTGATGGTGTCAGCCACACAGTGCCCATTTA
EST: gi|29640111|gb|CB645120.1|CB645120
EST:     CGTCGCTATCCAGGCCGTGCTTTCCCTCTATGCCAGTGGCCGTACTACTG                         GTATTGTTCTTGATTCTGGTGATGGTGTCAGCCACACAGTGCCCATTTATG
genomic: CGTCGCTATCCAGGCCGTGCTTTCCCTCTATGCCAGTGGCCGTACTACTGgtatgtatga ... tgctctgcagGTATTGTTCTTGATTCTGGTGATGGTGTCAGCCACACAGTGCCCATTTATG
EST: gi|58606982|gb|CK035015.1|CK035015
EST:     CGTCGCTATCCAGGCCGTGCTTTCCCTCTATGCCAGTGGCCGTACTACTG                         GTATTGTTCTTGATTCTGGTGATGGTGTCAGCCACACAGTGCCCATTTATG
genomic: CGTCGCTATCCAGGCCGTGCTTTCCCTCTATGCCAGTGGCCGTACTACTGgtatgtatga ... tgctctgcagGTATTGTTCTTGATTCTGGTGATGGTGTCAGCCACACAGTGCCCATTTATG
EST: gi|88304074|gb|CI599762.1|CI599762
EST:     CGTC-CTATCCAGGCCGTGCTTTCC-TCTAT-CCAGTGGCCGTA-TAATG                         GTATTGTTCTTGATTCTGGTGATGGTGT-AGCAA-ACAGTGC
genomic: CGTCGCTATCCAGGCCGTGCTTTCCCTCTATGCCAGTGGCCGTACTACTGgtatgtatga ... tgctctgcagGTATTGTTCTTGATTCTGGTGATGGTGTCAGCCACACAGTGC
EST: gi|29655669|gb|CB651944.1|CB651944
EST:     CGTCGCTATCCAGGCCGTGCTTTCCCTCTATGCCAGTGGCCGTACTACTG                         GTATTGTTCTTGATTCTGGTGATGGTGTCAGCCACACAGTGCCCATTTATG
genomic: CGTCGCTATCCAGGCCGTGCTTTCCCTCTATGCCAGTGGCCGTACTACTGgtatgtatga ... tgctctgcagGTATTGTTCTTGATTCTGGTGATGGTGTCAGCCACACAGTGCCCATTTATG
EST: gi|58604393|gb|CK014921.1|CK014921
EST:     CGTCGCTATCCAGGCCGTGCTTTCCCTCTATGCCAGTGGCCGTACTACTG                         GTATTGTTCTTGATTCTGGTGATGGTGTCAGCCACACAGTGCCCATTTATG
genomic: CGTCGCTATCCAGGCCGTGCTTTCCCTCTATGCCAGTGGCCGTACTACTGgtatgtatga ... tgctctgcagGTATTGTTCTTGATTCTGGTGATGGTGTCAGCCACACAGTGCCCATTTATG
EST: gi|58686331|gb|CK075018.1|CK075018
EST:     CGTCGCTATCCAGGCCGTGCTTTCCCTCTATGCCAGTGGCCGTACTACTG                         GTATTGTTCTTGATTCTGGTGATGGTGT
genomic: CGTCGCTATCCAGGCCGTGCTTTCCCTCTATGCCAGTGGCCGTACTACTGgtatgtatga ... tgctctgcagGTATTGTTCTTGATTCTGGTGATGGTGT
EST: gi|58682347|gb|CK071034.1|CK071034
EST:     CGTCGCTATCCAGGCCGTGCTTTCCCTCTATGCCAGTGGCCGTACTACTG                         GTATTGTTCTTGATTCTGGTGATGGTGTCAGCCACACAGTGCCCATTTATG
genomic: CGTCGCTATCCAGGCCGTGCTTTCCCTCTATGCCAGTGGCCGTACTACTGgtatgtatga ... tgctctgcagGTATTGTTCTTGATTCTGGTGATGGTGTCAGCCACACAGTGCCCATTTATG
EST: gi|58676432|gb|CK065119.1|CK065119
EST:     CGTCGCTATCCAGGCCGTGCTTTCCCTCTATGCCAGTGGCCGTACTACTG                         GTATTGTTCTTGATTCTGGTGATGGTGTCAGCCACACAGTGCCCATTTATG
genomic: CGTCGCTATCCAGGCCGTGCTTTCCCTCTATGCCAGTGGCCGTACTACTGgtatgtatga ... tgctctgcagGTATTGTTCTTGATTCTGGTGATGGTGTCAGCCACACAGTGCCCATTTATG
EST: gi|58660466|gb|CK049146.1|CK049146
EST:     CGTCGCTATCCAGGCCGTGCTTTCCCTCTATGCCAGTGGCCGTACTACTG                         GTATTGTTCTTGATTCTGGTGATGGTGTC
genomic: CGTCGCTATCCAGGCCGTGCTTTCCCTCTATGCCAGTGGCCGTACTACTGgtatgtatga ... tgctctgcagGTATTGTTCTTGATTCTGGTGATGGTGTC
EST: gi|58670222|gb|CK058908.1|CK058908
EST:     CGTCGCTATCCAGGCCGTGCTTTCCCTCTATGCCAGTGGCCGTACTACTG                         GTATTGTTCTTGATTCTGGTGATGGTGTCAGCCACACAGTGCCCATTTATG
genomic: CGTCGCTATCCAGGCCGTGCTTTCCCTCTATGCCAGTGGCCGTACTACTGgtatgtatga ... tgctctgcagGTATTGTTCTTGATTCTGGTGATGGTGTCAGCCACACAGTGCCCATTTATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actgtcgacaagtaaatgttttatttagaggagcttatgtttctctgctctgcagGTATTGTTCTTGATTCTGGTGATGGTGTCAGCCACACAGTGCCCATTTATGAAGGATATGCGCTTCCTCATGCCATTCTCCGTTTGGATCTGGCTGGTCG
 agctaac  putative branch site (score: 2)
                                     tgtttctctgctct  putative PPT
         aagtaaatgttttatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
aagctacctgcgaccccattgtgtccaggcctgaacaaacagctaactgtcgacaagtaaatgttttatttagaggagcttatgtttctctgctctgcagGTATTGTTCTTGATTCTGGTGATGGTGTCAGCCACACAGTGCCCATTTATGAAGGATATGCGCTTCCTCATGCCATTCTCCGTTTGGATCTGGCTGGTCG

- - tacctgc
- - - - - - - - - -tgtgtcc
- - - - - - - - - - - - - - -cctgaac
- - - - - - - - - - - - - - - - - - aaacagc
- - - - - - - - - - - - - - - - - - - - - - - - - - -caagtaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcttatg