1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...attgttctgtttaacgattctagaagctttatctacagtcggttcctgacagtgcatgcaacctacatggttaatggcttccatttatatcacaccacagGTTGTTGAGATCACCAAGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAAACTGGACTGATTAAG
species | Oryza sativa |
transcript | LOC_Os04g59040.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCCCTGGTGCTCCTGCTGTCTTCAACGTT GTTGTTGAGATCACCAAGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAAEST: gi|55433781|gb|CV730004.1|CV730004
genomic: GCCCTGGTGCTCCTGCTGTCTTCAACGTTgtaagtgtca ... cacaccacagGTTGTTGAGATCACCAAGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAA
EST: GCCCTGGTGCTCCTGCTGTCTTCAACGTT GTTGTTGAGATCACCAAGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAAEST: gi|3768324|gb|AU032351.1|AU032351
genomic: GCCCTGGTGCTCCTGCTGTCTTCAACGTTgtaagtgtca ... cacaccacagGTTGTTGAGATCACCAAGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAA
EST: GCCCTGGTGCTCCTGCTGTCTTCAACGTT GTTGTTGAGATCACCAAGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAAEST: gi|33794379|gb|CF323075.1|CF323075
genomic: GCCCTGGTGCTCCTGCTGTCTTCAACGTTgtaagtgtca ... cacaccacagGTTGTTGAGATCACCAAGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAA
EST: GCCCTGGTGCTCCTGCTGTCTTCAACGTT GTTGTTGAGATCACCAAGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAAEST: gi|88423146|gb|CI613447.1|CI613447
genomic: GCCCTGGTGCTCCTGCTGTCTTCAACGTTgtaagtgtca ... cacaccacagGTTGTTGAGATCACCAAGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAA
EST: GCCCTGGTGCTCCTGCTGTCTTCAACGTT GTTGTTGAGATCACCAAGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAAEST: gi|33681023|gb|CF309262.1|CF309262
genomic: GCCCTGGTGCTCCTGCTGTCTTCAACGTTgtaagtgtca ... cacaccacagGTTGTTGAGATCACCAAGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAA
EST: GCCCTGGTGCTCCTGCTGTCTTCAACGTT GTTGTTGAGATCACCAAGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAAEST: gi|88732604|gb|CI755781.1|CI755781
genomic: GCCCTGGTGCTCCTGCTGTCTTCAACGTTgtaagtgtca ... cacaccacagGTTGTTGAGATCACCAAGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAA
EST: GCCCTGGTGCTCCTGCTGTCTTCAACGTT GTTGTTGAGATCACCAAGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAAEST: gi|88300646|gb|CI587450.1|CI587450
genomic: GCCCTGGTGCTCCTGCTGTCTTCAACGTTgtaagtgtca ... cacaccacagGTTGTTGAGATCACCAAGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAA
EST: GCCCTGGTGCTCCTGCTGTCTTCAACGTT GTTGTTGAGATCACCAAGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAAEST: gi|88427290|gb|CI586838.1|CI586838
genomic: GCCCTGGTGCTCCTGCTGTCTTCAACGTTgtaagtgtca ... cacaccacagGTTGTTGAGATCACCAAGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAA
EST: GCCCTGGTGCTCCTGCTGTCTTCAACGTT GTTGTTGAGATCACCAAGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAAEST: gi|88721865|gb|CI743377.1|CI743377
genomic: GCCCTGGTGCTCCTGCTGTCTTCAACGTTgtaagtgtca ... cacaccacagGTTGTTGAGATCACCAAGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAA
EST: GCCCTGGTGCTCCTGCTGTCTTCAACGTT GTTGTTGAGATCACCAAGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAAEST: gi|33686066|gb|CF314305.1|CF314305
genomic: GCCCTGGTGCTCCTGCTGTCTTCAACGTTgtaagtgtca ... cacaccacagGTTGTTGAGATCACCAAGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAA
EST: GCCCTGGTGCTCCTGCTGTCTTCAACGTT GTTGTTGAGATCACCAAGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAAEST: gi|58602895|gb|CK013423.1|CK013423
genomic: GCCCTGGTGCTCCTGCTGTCTTCAACGTTgtaagtgtca ... cacaccacagGTTGTTGAGATCACCAAGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAA
EST: GCCCTGGTGCTCCTGCTGTCTTCAACGTT GTTGTTGAGATCACCAAGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAAEST: gi|286879|gb|D15686.1|D15686
genomic: GCCCTGGTGCTCCTGCTGTCTTCAACGTTgtaagtgtca ... cacaccacagGTTGTTGAGATCACCAAGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAA
EST: GCCCTGGTGCTCCTGCTGTCTTCAACGTT GTTGTTGAGATCACCAAGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAAEST: gi|66915284|gb|CX102132.1|CX102132
genomic: GCCCTGGTGCTCCTGCTGTCTTCAACGTTgtaagtgtca ... cacaccacagGTTGTTGAGATCACCAAGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAA
EST: GCCCTGGTGCTCCTGCTGTCTTCAACGTT GTTGTAGAGATCACCAAGGGAAGCAAAGTGAAATATGAGCTTGACAACGAAEST: gi|88726501|gb|CI750156.1|CI750156
genomic: GCCCTGGTGCTCCTGCTGTCTTCAACGTTgtaagtgtca ... cacaccacagGTTGTTGAGATCACCAAGGGAAGCAAAGTGAAATATGAGCTTGACAA-GAA
EST: GCCCTGGTGCTCCTGCTGTCTTCAACGTT GTTGTTGAGATCACCAAGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAAEST: gi|27554006|gb|CA997906.1|CA997906
genomic: GCCCTGGTGCTCCTGCTGTCTTCAACGTTgtaagtgtca ... cacaccacagGTTGTTGAGATCACCAAGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAA
EST: GCCCTGGTGCTCCTGCTGTCTTCAACGTT GTTGTTGAGATCACCAAGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAAEST: gi|55433023|gb|CV729535.1|CV729535
genomic: GCCCTGGTGCTCCTGCTGTCTTCAACGTTgtaagtgtca ... cacaccacagGTTGTTGAGATCACCAAGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAA
EST: GCCCTGGTGCTCCTGCTGTCTTCAACGTT GTTGTTGAGATCACCAAGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAAEST: gi|86907275|gb|CI292840.1|CI292840
genomic: GCCCTGGTGCTCCTGCTGTCTTCAACGTTgtaagtgtca ... cacaccacagGTTGTTGAGATCACCAAGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAA
EST: GCCCTGGTGCTCCTGCTGTCTTCAACGTT GTTGTTGAGATCACCAAGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAAEST: gi|32948454|gb|BP185026.1|BP185026
genomic: GCCCTGGTGCTCCTGCTGTCTTCAACGTTgtaagtgtca ... cacaccacagGTTGTTGAGATCACCAAGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAA
EST: GCCCTGGTGCTCCTGCTGTCTTCAACGTT GTTGTTGAGATCACCAAGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAAEST: gi|218494174|gb|FG955165.1|FG955165
genomic: GCCCTGGTGCTCCTGCTGTCTTCAACGTTgtaagtgtca ... cacaccacagGTTGTTGAGATCACCAAGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAA
EST: GCTGTCTTCAACGTT GTTGTTGAGATCACCAAGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAAEST: gi|58599062|gb|CK009590.1|CK009590
genomic: GCTGTCTTCAACGTTgtaagtgtca ... cacaccacagGTTGTTGAGATCACCAAGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAA
EST: GGCCTGGTGCTCCTGCTGTCTTCAACGTT GTTGTTGAGATCACCAAGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAAEST: gi|55409712|gb|CV722088.1|CV722088
genomic: GCCCTGGTGCTCCTGCTGTCTTCAACGTTgtaagtgtca ... cacaccacagGTTGTTGAGATCACCAAGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAA
EST: GCCCTGGTGCTCCTGCTGTCTTCAACGTT GTTGTTGAGATCACCAAGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAAEST: gi|33693190|gb|CF321429.1|CF321429
genomic: GCCCTGGTGCTCCTGCTGTCTTCAACGTTgtaagtgtca ... cacaccacagGTTGTTGAGATCACCAAGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAA
EST: GCCCTGGTGCTCCTGCTGTCTTCAACGTT GTTGTTGAGATCACCAAGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAAEST: gi|58671895|gb|CK060581.1|CK060581
genomic: GCCCTGGTGCTCCTGCTGTCTTCAACGTTgtaagtgtca ... cacaccacagGTTGTTGAGATCACCAAGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAA
EST: GCCCTGGTGCTCCTGCTGTCTTCAACGTT GTTGTTGAGATCACCAAGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAAEST: gi|88742766|gb|CI766274.1|CI766274
genomic: GCCCTGGTGCTCCTGCTGTCTTCAACGTTgtaagtgtca ... cacaccacagGTTGTTGAGATCACCAAGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAA
EST: GCCCTGGTGCTCCTGCTGTCTTCAACGTT GTTGTTGAGATCACCAAGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAAEST: gi|163927162|gb|EG710251.1|EG710251
genomic: GCCCTGGTGCTCCTGCTGTCTTCAACGTTgtaagtgtca ... cacaccacagGTTGTTGAGATCACCAAGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAA
EST: GCCCTGGTGCTCCTGCTGTCTTCAACGTT GTTGTTGAGATCACCAAGGGAAGCAEST: gi|88405920|gb|CI591315.1|CI591315
genomic: GCCCTGGTGCTCCTGCTGTCTTCAACGTTgtaagtgtca ... cacaccacagGTTGTTGAGATCACCAAGGGAAGCA
EST: GCCCTGGTGCTCCTGCTGTCTTCAACGTT GTTGTTGACATCACCAAGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAAEST: gi|25799147|gb|CA755108.1|CA755108
genomic: GCCCTGGTGCTCCTGCTGTCTTCAACGTTgtaagtgtca ... cacaccacagGTTGTTGAGATCACCAAGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAA
EST: GCCCTGGTGCTCCTGCTGTCTTCAACGTT GTTGTTGAGATCACCAAGGGAAGCAAAGTGAEST: gi|55434349|gb|CV730296.1|CV730296
genomic: GCCCTGGTGCTCCTGCTGTCTTCAACGTTgtaagtgtca ... cacaccacagGTTGTTGAGATCACCAAGGGAAGCAAAGTGA
EST: GCCCTGGTGCTCCTGCTGTCTTCAACGTT GTTGTTGAGATCACCAAGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAAEST: gi|163925905|gb|EG712281.1|EG712281
genomic: GCCCTGGTGCTCCTGCTGTCTTCAACGTTgtaagtgtca ... cacaccacagGTTGTTGAGATCACCAAGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAA
EST: GCCCTGGTGCTCCTGCTGTCTTCAACGTT GTTGTTGAGATCACCAAGGGAAGCAAAGCGAAATATGAGCTTGACAAGAAAEST: gi|86848615|gb|CI293930.1|CI293930
genomic: GCCCTGGTGCTCCTGCTGTCTTCAACGTTgtaagtgtca ... cacaccacagGTTGTTGAGATCACCAAGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAA
EST: GCCCTGGTGCTCCTGCTGTCTTCAACGTT GTTGTTGAGATCACCAAGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAA
genomic: GCCCTGGTGCTCCTGCTGTCTTCAACGTTgtaagtgtca ... cacaccacagGTTGTTGAGATCACCAAGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAA
ctgacagtgcatgcaacctacatggttaatggcttccatttatatcacaccacagGTTGTTGAGATCACCAAGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAAACTGGACTGATTAAG
atttatatca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attgttctgtttaacgattctagaagctttatctacagtcggttcctgacagtgcatgcaacctacatggttaatggcttccatttatatcacaccacagGTTGTTGAGATCACCAAGGGAAGCAAAGTGAAATATGAGCTTGACAAGAAAACTGGACTGATTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA