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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttctgttttattgttttttcaactggttatgatgaattagcttcaaggtttctgaaggtctcctttttgggcagGTATTTGGATCGCAACATGCTTTTTGGGACAATTCCGAAACAGCTAGGTTCACTGAGGAACCTTAGGGTCTTGGATTTGGGTGTTAATAGGCTTACTGGT

Basic information

species Oryza sativa
transcript LOC_Os04g58700.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58652550|gb|CK041230.1|CK041230
EST:     GGGATTTATCGCGCCTGAACTTGGACAGCTGAGCTTCTTGCAAGAGCT                         GTATTTGGATCGCAACATGCTTTTTGGGACAATTCCGAAACAGCTAGGTTC
genomic: GGGATTTATCGCGCCTGAACTTGGACAGCTGAGCTTCTTGCAAGAGCTgtatgttctg ... ttttgggcagGTATTTGGATCGCAACATGCTTTTTGGGACAATTCCGAAACAGCTAGGTTC
EST: gi|58661808|gb|CK050488.1|CK050488
EST:     AAGGGATTTATCGCGCCTGAACTTGGACAGCTGAGCTTCTTGCAAGAGCT                         GTATTTGGATCGCAACATGCTTTTTGGGACAATTCCGAAACAGCTAGGTTC
genomic: AAGGGATTTATCGCGCCTGAACTTGGACAGCTGAGCTTCTTGCAAGAGCTgtatgttctg ... ttttgggcagGTATTTGGATCGCAACATGCTTTTTGGGACAATTCCGAAACAGCTAGGTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caactggttatgatgaattagcttcaaggtttctgaaggtctcctttttgggcagGTATTTGGATCGCAACATGCTTTTTGGGACAATTCCGAAACAGCTAGGTTCACTGAGGAACCTTAGGGTCTTGGATTTGGGTGTTAATAGGCTTACTGGT
                                       tctccttttt  CT-rich tract
            atgaatta  TA-rich tract