Sequence
atgc intronic sequence ATGC exonic sequencegtaagctatcaagacccgctaccacatcttaatgacatattcccaactattttgtaccatcatgatgaccaaggctgatctatgaacatgagtattcgtgttaattgaatcaataagagagattgctcaattgctatttatgttgggatcaacatttagGAATTTGGCAACATCGAGTCACCTATGTATGCAAGGCTTCGTCACTTCTTGTCCACAATCTACACCAGGTTCTAAAACTTCAACAGTACAACTTGCTTAT
Basic information
species | Oryza sativa |
transcript | LOC_Os04g57210.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os04g57210.2 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G043862_T01 (Zea mays), 3'ss of exon 3
gtaagctatcaagacccgctac------cacatcttaatgacatatt---cccaactattttgtaccatcatgatgaccaaggctgatctatgaacatgagtattcgtgttaattgaatcaata--------agagagattgctcaattgctatttatgttgggatcaacatttagGAATTTGGCAACATCGAGTCACCTATGTATGCAAGGCTTCGTCACTTCTTGTCCACAATCTACACCAGGTTCTAAAACTTCAACAGTACAACTTGCTTAT
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gtaagctgtggtgatcgctggcaagggtcacatcttaatggcacatgatgcccatgaatgttgtg--atgaccaagaccaatgctaacttttaatctcaag-attgatgctaactgaatcatcagagctcaaagagatgttgct-aatttctatgtctgttgcgattatcctgcagGAATTCGGTAACATTGAAGCACCTATGTATGCAAGGCTTCGTCACTTCTTCTCTACAATATATACGAG--------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|29618213|gb|CB623225.1|CB623225EST: ACGGATGGAGCAAGTATGCTGCTCCATCTGGGCGTTGTGCGACATTCTTG GAATTTGGCAACATCGAGTCACCTATGTATGCAAGGCTTCGTCACTTCTTG
genomic: ACGGATGGAGCAAGTATGCTGCTCCATCTGGGCGTTGTGCGACATTCTTGgtaagctatc ... caacatttagGAATTTGGCAACATCGAGTCACCTATGTATGCAAGGCTTCGTCACTTCTTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttgaatcaataagagagattgctcaattgctatttatgttgggatcaacatttagGAATTTGGCAACATCGAGTCACCTATGTATGCAAGGCTTCGTCACTTCTTGTCCACAATCTACACCAGGTTCTAAAACTTCAACAGTACAACTTGCTTAT
tatttatgtt TA-rich tract