1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtacgttcttctgcttcttttggtctagatgtcgctgctaatgttttgttctgatggaagttcctaattatgttttcttggttctgcagAGGATCAAATTCGGGAAGCAAAGAAATTTAAGCCCTCCAATGTAGCTACTCAGCCTATGCCTCTGATTAATCAACCCTCTGTGGTGATTTCTGATGCACT
species | Oryza sativa |
transcript | LOC_Os04g56980.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTTTAAGATGAATAAATTGTTGGCGAAACATATAACTCCACTTGACCCAA AGGATCAAATTCGGGAAGCAAAGAAATTTAAGCCCTCCAATGTAGCTACTCEST: gi|58601754|gb|CK012282.1|CK012282
genomic: GTTTAAGATGAATAAATTGTTGGCGAAACATATAACTCCACTTGACCCAAgtacgttctt ... ggttctgcagAGGATCAAATTCGGGAAGCAAAGAAATTTAAGCCCTCCAATGTAGCTACTC
EST: GTTTAAGATGAATAAATTGTTGGCGAAACATATAACTCCACTTGACCCAA AGGATCAAATTCGGGAAGCAAAGAAATTTAAGCCCTCCAATGTAGCTACTCEST: gi|84117678|gb|CD151445.1|CD151445
genomic: GTTTAAGATGAATAAATTGTTGGCGAAACATATAACTCCACTTGACCCAAgtacgttctt ... ggttctgcagAGGATCAAATTCGGGAAGCAAAGAAATTTAAGCCCTCCAATGTAGCTACTC
EST: GTTTAAGATGAATAAATTGTTGGCGAAACATATAACTCCACTTGACCCAA AGGATCAAATTCCGGAAGCAAAGAAATTTAAGCCCEST: gi|27576903|gb|CA999597.1|CA999597
genomic: GTTTAAGATGAATAAATTGTTGGCGAAACATATAACTCCACTTGACCCAAgtacgttctt ... ggttctgcagAGGATCAAATTCGGGAAGCAAAGAAATTTAAGCCC
EST: GTTTAAGATGAATAAATTGTTGGCGAAACATATAACTCCACTTGACCCAA AGGATCAAATTCGGGAAGCAAAGAAATTTAAGCCCTCCAATGTAGCTACTCEST: gi|86504620|gb|CI147253.1|CI147253
genomic: GTTTAAGATGAATAAATTGTTGGCGAAACATATAACTCCACTTGACCCAAgtacgttctt ... ggttctgcagAGGATCAAATTCGGGAAGCAAAGAAATTTAAGCCCTCCAATGTAGCTACTC
EST: TTGTTGGCGAAACATATAACTCCACTTGACCCAA AGGATCAAATTCGGGAAGCAAAGAAATTTAAGCCCTCCAATGTAGCTACTCEST: gi|29642597|gb|CB647604.1|CB647604
genomic: TTGTTGGCGAAACATATAACTCCACTTGACCCAAgtacgttctt ... ggttctgcagAGGATCAAATTCGGGAAGCAAAGAAATTTAAGCCCTCCAATGTAGCTACTC
EST: GTTTAAGATGAATAAATTGTTGGCGAAACATATAACTCCACTTGACCCAA AGGATCAAATTCGGGAAGCAAAGAAATTTAAGCCCTCCAATGTAGCTACTCEST: gi|29660434|gb|CB656709.1|CB656709
genomic: GTTTAAGATGAATAAATTGTTGGCGAAACATATAACTCCACTTGACCCAAgtacgttctt ... ggttctgcagAGGATCAAATTCGGGAAGCAAAGAAATTTAAGCCCTCCAATGTAGCTACTC
EST: GTTTAAGATGAATAAATTGTTGGCGAAACATATAACTCCACTTGACCCAA AGGATCAAATTCGGGAAGCAAAGAAATTTAAGCCCTCCAATGTAGCTACTC
genomic: GTTTAAGATGAATAAATTGTTGGCGAAACATATAACTCCACTTGACCCAAgtacgttctt ... ggttctgcagAGGATCAAATTCGGGAAGCAAAGAAATTTAAGCCCTCCAATGTAGCTACTC
ctgctaatgttttgttctgatggaagttcctaattatgttttcttggttctgcagAGGATCAAATTCGGGAAGCAAAGAAATTTAAGCCCTCCAATGTAGCTACTCAGCCTATGCCTCTGATTAATCAACCCTCTGTGGTGATTTCTGATGCACT
tcctaat putative branch site (score: 39)
ttttcttg putative PPT
taattatgttttctt TA-rich tract