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...gccagtgatgctcttattagttttgttccttattgtttccaaatcaaaacttacctattttcttgatgataactgacatgctcctttgttttgcacatagTCTGTAGATTATGATAAGGAGGGATCTGTCTTGCGTGTACGTGGAAAAAATATAACTGAGAACGATCATGTGAAGATTGGACAGTTTCATACTGTGGAGC
species | Oryza sativa |
transcript | LOC_Os04g56480.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GAGGACGTGATGCTGAGCGTGTGAGGTTAAAGTTGGAAATTGTAGTCGAG TCTGTAGATTATGATAAGGAGGGATCTGTCTTGCGTGTACGTGGAAAAAATEST: gi|58595078|gb|CF993386.1|CF993386
genomic: GAGGACGTGATGCTGAGCGTGTGAGGTTAAAGTTGGAAATTGTAGTCGAGgtgatatatc ... ttgcacatagTCTGTAGATTATGATAAGGAGGGATCTGTCTTGCGTGTACGTGGAAAAAAT
EST: GAGGACGTGATGCTGAGCGTGTGAGGTTAAAGTTGGAAATTGTAGTCGAG TCTGTAGATTATGATAAGGAGGGATCTGTCTTGCGTGTACGTGGAAAAAAT
genomic: GAGGACGTGATGCTGAGCGTGTGAGGTTAAAGTTGGAAATTGTAGTCGAGgtgatatatc ... ttgcacatagTCTGTAGATTATGATAAGGAGGGATCTGTCTTGCGTGTACGTGGAAAAAAT
aaaacttacctattttcttgatgataactgacatgctcctttgttttgcacatagTCTGTAGATTATGATAAGGAGGGATCTGTCTTGCGTGTACGTGGAAAAAATATAACTGAGAACGATCATGTGAAGATTGGACAGTTTCATACTGTGGAGC
aactgac putative branch site (score: 2)
tgctcctttgtttt CT-rich tract
tattttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gccagtgatgctcttattagttttgttccttattgtttccaaatcaaaacttacctattttcttgatgataactgacatgctcctttgttttgcacatagTCTGTAGATTATGATAAGGAGGGATCTGTCTTGCGTGTACGTGGAAAAAATATAACTGAGAACGATCATGTGAAGATTGGACAGTTTCATACTGTGGAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG