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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattggtttgttctctttccataattcactagatgttgagttttgtgtatagaattgacagaactaccacgtgatattgtttgctgtagATGATGCTTATAAAAGTACCGACAGTGAATTCTTAGAATCTGACAGCAGTCAAAACCAGTGTGGATCAACTGCATCAACCGCTGTCCTTGTTGGTGACCG

Basic information

species Oryza sativa
transcript LOC_Os04g56450.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g56450.2 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G056572_T02 (Zea mays), 3'ss of exon 3
gtattggtttgttctctttccataattcactagatgttgagttttgtgtatagaattgacagaact--accacgtgatattgt-ttgctgtagATGATGCTTATAAAAGTACCGACAGTGAATTCTTAGAATCTGACAGCAGTCAAAACCAGTGTGGATCAACTGCATCAACCGCTGTCCTTGTTGGTGACCG
||||    ||| ||| |||||      ||  || ||     || |||| ||  ||     ||  ||  | |  |||   |||| || ||| |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| || || || |||||||||||||| ||||| ||||||||||| ||
gtatactcttgctctttttcccgctaacatcagttgc----ttatgtgaatgcaaccatgagggcttgagcttgtgtgtttgtattactgcagATGATGCTTATAAAAGCACCGACAGTGAATTCTTAGAATCTGACAGTAGTCAAAATCAATGCGGGTCAACTGCATCAACTGCTGTACTTGTTGGTGATCG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|701023|gb|D47314.1|D47314
EST:     TCATCTTCTAAGGCATCCAAAGTTCATCAGTGACACCAAAGTGGCAATAG                         ATGATGCTTATAAAAGTACCGACAGTGAATTCTTAGAATCTGACAGCAGTC
genomic: TCATCTTCTAAGGCATCCAAAGTTCATCAGTGACACCAAAGTGGCAATAGgtattggttt ... tttgctgtagATGATGCTTATAAAAGTACCGACAGTGAATTCTTAGAATCTGACAGCAGTC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttgagttttgtgtatagaattgacagaactaccacgtgatattgtttgctgtagATGATGCTTATAAAAGTACCGACAGTGAATTCTTAGAATCTGACAGCAGTCAAAACCAGTGTGGATCAACTGCATCAACCGCTGTCCTTGTTGGTGACCG
                  aattgac  putative branch site (score: 3)
             tatagaatt  TA-rich tract