1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gttaaataagttaatcctaaattccttgttcttttcaattatgttgttatttccatgacttgggcttgcactgattgccatttcctgatatcattcttagGGTATCTTCACGGGTAAATGTGGAACAGCACTAGACCACGGCGTCGCTGCTGTTGGGTACGGCACAGAGAATGGCAAGGACTACTGGATCGTGAGGAACT
species | Oryza sativa |
transcript | LOC_Os04g55650.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCAGTGTTGCAATTGAAGCCGGTGGCAGAGCATTCCAGCTCTACTCATCG GGTATCTTCACGGGTAAATGTGGAACAGCACTEST: gi|86830251|gb|CI290403.1|CI290403
genomic: TCAGTGTTGCAATTGAAGCCGGTGGCAGAGCATTCCAGCTCTACTCATCGgtaagtcgat ... tcattcttagGGTATCTTCACGGGTAAATGTGGAACAGCACT
EST: TCAGTGTTGCAATTGAAGCCGGTGGCAGAGCATTCCAGCTCTACTCATCG GGTATCTTCACGGGTAAATGTGGAACAGCACTAGACCACGGCGTCGCTGCTEST: gi|86894217|gb|CI306118.1|CI306118
genomic: TCAGTGTTGCAATTGAAGCCGGTGGCAGAGCATTCCAGCTCTACTCATCGgtaagtcgat ... tcattcttagGGTATCTTCACGGGTAAATGTGGAACAGCACTAGACCACGGCGTCGCTGCT
EST: TCAGTGTTGCAATTGAAGCCGGTGGCAGAGCATTCCAGCTCTACTCATCG GGTATCTTCACGGGTAAATGTGGAACAGCACTAGACCACGGCGTCGCTGCTEST: gi|86905739|gb|CI287304.1|CI287304
genomic: TCAGTGTTGCAATTGAAGCCGGTGGCAGAGCATTCCAGCTCTACTCATCGgtaagtcgat ... tcattcttagGGTATCTTCACGGGTAAATGTGGAACAGCACTAGACCACGGCGTCGCTGCT
EST: TCAGTGTTGCAATTGAAGCCGGTGGCAGAGCATTCCAGCTCTACTCATCG GGTATCTTCACGGGTAAATGTGGAACAGCACTAGACCACGGCGTCGCTGCTEST: gi|58591175|gb|CF989483.1|CF989483
genomic: TCAGTGTTGCAATTGAAGCCGGTGGCAGAGCATTCCAGCTCTACTCATCGgtaagtcgat ... tcattcttagGGTATCTTCACGGGTAAATGTGGAACAGCACTAGACCACGGCGTCGCTGCT
EST: TCAGTGTTGCAATTGAAGCCGGTGGCAGAGCATTCCAGCTCTACTCATCG GGTATCTTCACGEST: gi|33364707|gb|BP433017.1|BP433017
genomic: TCAGTGTTGCAATTGAAGCCGGTGGCAGAGCATTCCAGCTCTACTCATCGgtaagtcgat ... tcattcttagGGTATCTTCACG
EST: TCAGTGTTGCAATTGAAGCCGGTGGCAGAGCATTCCAGCTCTACTCATCG GGTATCTTCACGGGTAAATGTGGAACAGCACTAGACCACGGCGTCGCTGCTEST: gi|86847823|gb|CI288863.1|CI288863
genomic: TCAGTGTTGCAATTGAAGCCGGTGGCAGAGCATTCCAGCTCTACTCATCGgtaagtcgat ... tcattcttagGGTATCTTCACGGGTAAATGTGGAACAGCACTAGACCACGGCGTCGCTGCT
EST: TCAGTGTTGCAATTGAAGCCGGTGGCAGAGCATTCCAGCTCTACTCATCG GGTATCTTCACGGGTAAAEST: gi|14571289|gb|BI118657.1|BI118657
genomic: TCAGTGTTGCAATTGAAGCCGGTGGCAGAGCATTCCAGCTCTACTCATCGgtaagtcgat ... tcattcttagGGTATCTTCACGGGTAAA
EST: TCAGTGTTGCAATTGAAGCCGGTGGCAGAGCATTCCAGCTCTACTCATCG GGTATCTTCACGGGTAAATGTGGAACAGCACTAGATCACGGCGTCGCTGCTEST: gi|86898288|gb|CI290853.1|CI290853
genomic: TCAGTGTTGCAATTGAAGCCGGTGGCAGAGCATTCCAGCTCTACTCATCGgtaagtcgat ... tcattcttagGGTATCTTCACGGGTAAATGTGGAACAGCACTAGACCACGGCGTCGCTGCT
EST: TCAGTGTTGCAATTGAAGCCGGTGGCAGAGCATTCCAGCTCTACTCATCG GGTATCTTCACGGGTAAATGTGGAACAGCACTAGACCACGGCGTCGCTGCTEST: gi|14571385|gb|BI118753.1|BI118753
genomic: TCAGTGTTGCAATTGAAGCCGGTGGCAGAGCATTCCAGCTCTACTCATCGgtaagtcgat ... tcattcttagGGTATCTTCACGGGTAAATGTGGAACAGCACTAGACCACGGCGTCGCTGCT
EST: TCAGTGTTGCAATTGAAGCCGGTGGCAGAGCATTCCAGCTCTACTCATCG GGTATCTTCACGGGTAAATGTGGAACAGCACTAGATCACGGCGTCGCTGCT
genomic: TCAGTGTTGCAATTGAAGCCGGTGGCAGAGCATTCCAGCTCTACTCATCGgtaagtcgat ... tcattcttagGGTATCTTCACGGGTAAATGTGGAACAGCACTAGACCACGGCGTCGCTGCT
gttatttccatgacttgggcttgcactgattgccatttcctgatatcattcttagGGTATCTTCACGGGTAAATGTGGAACAGCACTAGACCACGGCGTCGCTGCTGTTGGGTACGGCACAGAGAATGGCAAGGACTACTGGATCGTGAGGAACT
tcctgat putative branch site (score: 140)
tcattctt CT-rich tract
atatcatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttaaataagttaatcctaaattccttgttcttttcaattatgttgttatttccatgacttgggcttgcactgattgccatttcctgatatcattcttagGGTATCTTCACGGGTAAATGTGGAACAGCACTAGACCACGGCGTCGCTGCTGTTGGGTACGGCACAGAGAATGGCAAGGACTACTGGATCGTGAGGAACT
- - - - - - - - - - - - -ttgttct
- - - - - - - - - - - - - - - - - - - - atgttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - ccatgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgattg