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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggcttgctacacagcttaaaaatgtatctgtaactttgtttagttatttgcaaattgcaatggtgcaacgtgattttgtgggaattctggaatcaagcattgcaaaattgcatatgcagaagaatagtagtagtgccataatttgttcagaaacataatcctgcattttccttgttgtgatcatgcagGCAGCATTTTTGTTCACTGTTGTTGGTTCAACCGGATTCTTAGGCGTTCTTGCAGGCCAGCTTCCTGGG

Basic information

species Oryza sativa
transcript LOC_Os04g54640.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g54640.2 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G004352_T01 (Zea mays), 3'ss of exon 3
gtaaggcttgctacacagcttaaaaatgt-atctgtaactttgtttagttatttgcaaattgcaatggtgcaacgtgattttgtgggaattctggaatcaagcattgcaaaattgcatatgcagaagaatagtagtagtgccataatttgttcagaaacataatcctgcattttccttgttgtgatcatgcagGCAGCATTTTTGTTCACTGTTGTTGGTTCAACCGGATTCTTAGGCGTTCTTGCAGGCCAGCTTCCTGGG
                   | |    ||| |  ||   |   |||    | |||   | ||| |||| || |  |   ||  |  |  |  |  ||  |||   | |||  |||        ||   ||||       | || |  |||  |||||    ||||||||| | ||| |||         ||||||| ||||| ||||| || ||||| ||| | || |||||||||| ||| |||||||||||||| ||||||
------------------gtgagtgttgttacttgctccacagttccagtctttcgtatttgaaatgctg-actgctgttcagctgttagcc--gaggcaaatgtagcatcatt-----cagagctaaata-------tcccgtgcttt--tcagag-tgtaatcctgcgtcttctttga-------gtgcagGCGGCATTCTTGTTTACAGTTGTGGGTACCACTGGATTCTTAGCCGTCCTTGCAGGCCAGCTCCCTGGG

upper sequence: LOC_Os04g54640.2 (Oryza sativa), 3'ss of exon 3
lower sequence: Vv07s0031g01560.t01 (Vitis vinifera), 3'ss of exon 3
gtaaggcttgctacacagcttaaaaatgtatctgtaactttgtttagttatttgcaaattgcaatggtgcaacgtgattttgtgggaattctggaatcaagcattgcaaaattgcatatgcagaagaatagtagtagtgccataatttgttcagaaacataatcc-tgcattttccttgttgtgatcatgcagGCAGCATTTTTGTTCACTGTTGTTGGTTCAACCGGATTCTTAGGCGTTCTTGCAGGCCAGCTTCCTGGG
                                                                               |  |   |||| || | |  |    ||  || || |||   | | | |  ||          | |||||| |  |||  |   | | || ||||    | ||    | ||||||||||| ||| | || || || || ||  |||| ||||| ||||| |||||||| |||||||||||||||
------------------------------------------------------------------------------atcattacaattttgcatttga----tgtgaattt-cattctctgcaaagaag----------agaatttgctttgaactactgttcatgaatttgatatctttcagtgatgcagGCAGCTTTTCTTTTTACGGTAGTGGGGACAACAGGATTTTTAGGTGTTCTTGCTGGCCAGCTTCCTGGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgccataatttgttcagaaacataatcctgcattttccttgttgtgatcatgcagGCAGCATTTTTGTTCACTGTTGTTGGTTCAACCGGATTCTTAGGCGTTCTTGCAGGCCAGCTTCCTGGG
     taatttgtt  TA-rich tract