1 5' 3' | 2 5' 3' | 3 5' 3' |
...aaacagagggagtactaagtatttctaattcagtacatagaaatgcttgatgttaaaacggtgtttactaatgttagttttttgaattgacgtgtggcagTGCGCTGGAGGAGCTGCACGCCAACTTCAACGAGCTGACGAAGCTGCCGGACACGCTGGGGTTCGAGCTGCACAGCCTCCGGAAGCTGTCGGTGAACTCC
species | Oryza sativa |
transcript | LOC_Os04g51580.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTCTCCGGCAACCTGCTCGAGTCCCTCCCCAACACCATCGAGGAGTGCCG TGCGCTGGAGGAGCTGCACGCCAACTTCAACGAGCTGEST: gi|29660969|gb|CB657244.1|CB657244
genomic: GTCTCCGGCAACCTGCTCGAGTCCCTCCCCAACACCATCGAGGAGTGCCGgtgagccacc ... cgtgtggcagTGCGCTGGAGGAGCTGCACGCCAACTTCAACGAGCTG
EST: GTCTCCGGCAACCTGCTCGAGTCCCTCCCCAACACCATCGAGGAGTGCCG TGCGCTGGAGGAGCTGCACGCCAACTTCAACGAGCTGACGAAGCTGCCGGAEST: gi|87005576|gb|CI287400.1|CI287400
genomic: GTCTCCGGCAACCTGCTCGAGTCCCTCCCCAACACCATCGAGGAGTGCCGgtgagccacc ... cgtgtggcagTGCGCTGGAGGAGCTGCACGCCAACTTCAACGAGCTGACGAAGCTGCCGGA
EST: GTCTCCGGCAACCTGCTCGAGTCCCTCCCCAACACCATCGAGGAGTGCCG TGCGCTGGAGGAGCTGCACGCCAACTTCAACGAGCTGACGAEST: gi|117231077|gb|CT860181.1|CT860181
genomic: GTCTCCGGCAACCTGCTCGAGTCCCTCCCCAACACCATCGAGGAGTGCCGgtgagccacc ... cgtgtggcagTGCGCTGGAGGAGCTGCACGCCAACTTCAACGAGCTGACGA
EST: GTCTCCGGCAACCTGCTCGAGTCCCTCCCCAACACCATCGAGGAGTGCCG TGCGCTGGAGGAGCTGCACGCCAACTTCAACGAGCTGACGAAGCTGCCGGAEST: gi|33823855|gb|CF337739.1|CF337739
genomic: GTCTCCGGCAACCTGCTCGAGTCCCTCCCCAACACCATCGAGGAGTGCCGgtgagccacc ... cgtgtggcagTGCGCTGGAGGAGCTGCACGCCAACTTCAACGAGCTGACGAAGCTGCCGGA
EST: GTCTCCGGCAACCTGCTCGAGTCCCTCCCCAACACCATCGAGGAGTGCCG TGCGCTGGAGGAGCTGCACGCCAACTTCAACGAGCTGACGAAGCTGCCGGAEST: gi|38472393|gb|CF956524.1|CF956524
genomic: GTCTCCGGCAACCTGCTCGAGTCCCTCCCCAACACCATCGAGGAGTGCCGgtgagccacc ... cgtgtggcagTGCGCTGGAGGAGCTGCACGCCAACTTCAACGAGCTGACGAAGCTGCCGGA
EST: GTCTCCGGCAACCTGCTCGAGTCCCTCCCCAACACCATCGAGGAGTGCCG TGCGCTGGAGGAGCTGCACGCCAACTTCAACGAGCTGACGAAGCTGCCGGA
genomic: GTCTCCGGCAACCTGCTCGAGTCCCTCCCCAACACCATCGAGGAGTGCCGgtgagccacc ... cgtgtggcagTGCGCTGGAGGAGCTGCACGCCAACTTCAACGAGCTGACGAAGCTGCCGGA
cttgatgttaaaacggtgtttactaatgttagttttttgaattgacgtgtggcagTGCGCTGGAGGAGCTGCACGCCAACTTCAACGAGCTGACGAAGCTGCCGGACACGCTGGGGTTCGAGCTGCACAGCCTCCGGAAGCTGTCGGTGAACTCC
taatgttagtttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaacagagggagtactaagtatttctaattcagtacatagaaatgcttgatgttaaaacggtgtttactaatgttagttttttgaattgacgtgtggcagTGCGCTGGAGGAGCTGCACGCCAACTTCAACGAGCTGACGAAGCTGCCGGACACGCTGGGGTTCGAGCTGCACAGCCTCCGGAAGCTGTCGGTGAACTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
aaacagag
- - - - - - - - - - - - - - - - - -catagaaa
- - - - - - - - - - - - - - - - - - - - - - -cttgatg