1 5' 3' | 2 5' 3' | 3 5' 3' |
gtacgcatgcatgatcagcgatcttgctctttgatctcgccttttggggatgtatgttgaattggttctgacgtgtgatctggtctggcttgtgatgtgcagGACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGATATCACTGAGGATGTTTGTCTACTGCCGAGGATTTGCATCACTAATAAT
species | Oryza sativa |
transcript | LOC_Os04g51150.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCG GACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGAEST: gi|86414751|gb|CI069154.1|CI069154
genomic: TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCGgtacgcatgc ... tgatgtgcagGACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
EST: TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCG GACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGAEST: gi|88908185|gb|CI090780.1|CI090780
genomic: TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCGgtacgcatgc ... tgatgtgcagGACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
EST: CGTCAATCACTTCGCATCG GACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGAEST: gi|88848252|gb|CI086774.1|CI086774
genomic: CGTCAATCACTTCGCATCGgtacgcatgc ... tgatgtgcagGACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
EST: TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCG GACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGAEST: gi|87026992|gb|CI259645.1|CI259645
genomic: TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCGgtacgcatgc ... tgatgtgcagGACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
EST: TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCG GACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGAEST: gi|86522408|gb|CI162614.1|CI162614
genomic: TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCGgtacgcatgc ... tgatgtgcagGACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
EST: TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCG GACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGAEST: gi|88976924|gb|CI257620.1|CI257620
genomic: TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCGgtacgcatgc ... tgatgtgcagGACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
EST: TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCG GACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGAEST: gi|88994380|gb|CI117334.1|CI117334
genomic: TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCGgtacgcatgc ... tgatgtgcagGACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
EST: TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCG GACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGAEST: gi|86259848|gb|CI065721.1|CI065721
genomic: TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCGgtacgcatgc ... tgatgtgcagGACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
EST: TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCG GACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGAEST: gi|89169707|gb|CI110066.1|CI110066
genomic: TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCGgtacgcatgc ... tgatgtgcagGACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
EST: TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCG GACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGAEST: gi|86412930|gb|CI067335.1|CI067335
genomic: TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCGgtacgcatgc ... tgatgtgcagGACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
EST: TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCG GACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGAEST: gi|88834097|gb|CI077578.1|CI077578
genomic: TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCGgtacgcatgc ... tgatgtgcagGACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
EST: TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCG GACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGAEST: gi|88994537|gb|CI117689.1|CI117689
genomic: TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCGgtacgcatgc ... tgatgtgcagGACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
EST: TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCG GACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGAEST: gi|86413101|gb|CI067506.1|CI067506
genomic: TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCGgtacgcatgc ... tgatgtgcagGACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
EST: TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCG GACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGAEST: gi|86259489|gb|CI065362.1|CI065362
genomic: TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCGgtacgcatgc ... tgatgtgcagGACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
EST: TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCG GACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGAEST: gi|87036668|gb|CI191290.1|CI191290
genomic: TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCGgtacgcatgc ... tgatgtgcagGACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
EST: TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCG GACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGAEST: gi|88201165|gb|CI201520.1|CI201520
genomic: TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCGgtacgcatgc ... tgatgtgcagGACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
EST: TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCG GACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGAEST: gi|86427412|gb|CI072509.1|CI072509
genomic: TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCGgtacgcatgc ... tgatgtgcagGACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
EST: TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCG GACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGAEST: gi|88276934|gb|CI396097.1|CI396097
genomic: TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCGgtacgcatgc ... tgatgtgcagGACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
EST: ACTTCGCATCG GACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGAEST: gi|88964669|gb|CI070015.1|CI070015
genomic: ACTTCGCATCGgtacgcatgc ... tgatgtgcagGACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
EST: TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCG GACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGAEST: gi|88221284|gb|CI221240.1|CI221240
genomic: TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCGgtacgcatgc ... tgatgtgcagGACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
EST: TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCG GACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGAEST: gi|88834663|gb|CI077946.1|CI077946
genomic: TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCGgtacgcatgc ... tgatgtgcagGACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
EST: TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCG GACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGAEST: gi|86413072|gb|CI067477.1|CI067477
genomic: TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCGgtacgcatgc ... tgatgtgcagGACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
EST: TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCG GACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGAEST: gi|88217977|gb|CI217826.1|CI217826
genomic: TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCGgtacgcatgc ... tgatgtgcagGACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
EST: TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCG GACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCAGAEST: gi|89194692|gb|CI117129.1|CI117129
genomic: TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCGgtacgcatgc ... tgatgtgcagGACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
EST: TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCG GACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGAEST: gi|86415428|gb|CI069831.1|CI069831
genomic: TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCGgtacgcatgc ... tgatgtgcagGACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
EST: TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCG GACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGAEST: gi|89194448|gb|CI116885.1|CI116885
genomic: TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCGgtacgcatgc ... tgatgtgcagGACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
EST: GTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCG GACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGAEST: gi|88961857|gb|CI097010.1|CI097010
genomic: GTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCGgtacgcatgc ... tgatgtgcagGACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
EST: TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCG GACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGAEST: gi|86600120|gb|CI258460.1|CI258460
genomic: TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCGgtacgcatgc ... tgatgtgcagGACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
EST: TCGTGCGCGCCGACGAGGCTCACCACCGCGGCGTCAATCACTTCGCATCG GACATCCATTACCCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGEST: gi|88994528|gb|CI117680.1|CI117680
genomic: TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCGgtacgcatgc ... tgatgtgcagGACATCCATTACC-AGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGG
EST: TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCG GACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGAEST: gi|86601981|gb|CI258657.1|CI258657
genomic: TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCGgtacgcatgc ... tgatgtgcagGACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
EST: TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCG GACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGAEST: gi|86545116|gb|CI185322.1|CI185322
genomic: TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCGgtacgcatgc ... tgatgtgcagGACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
EST: TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCG GACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGAEST: gi|8977569|gb|AU097576.1|AU097576
genomic: TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCGgtacgcatgc ... tgatgtgcagGACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
EST: TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCA-TTCGCATCG GACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGAEST: gi|88214626|gb|CI214475.1|CI214475
genomic: TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCGgtacgcatgc ... tgatgtgcagGACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
EST: TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCG GACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGAEST: gi|88283419|gb|CI404865.1|CI404865
genomic: TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCGgtacgcatgc ... tgatgtgcagGACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
EST: CGCGACGTCAATCACTTCGCATCG GACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGAEST: gi|86258742|gb|CI065095.1|CI065095
genomic: CGCGACGTCAATCACTTCGCATCGgtacgcatgc ... tgatgtgcagGACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
EST: TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCG GACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGAEST: gi|10930941|gb|AU161215.1|AU161215
genomic: TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCGgtacgcatgc ... tgatgtgcagGACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
EST: TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCG GACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGAEST: gi|86255252|gb|CI063741.1|CI063741
genomic: TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCGgtacgcatgc ... tgatgtgcagGACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
EST: TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCG GACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGAEST: gi|89194635|gb|CI117072.1|CI117072
genomic: TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCGgtacgcatgc ... tgatgtgcagGACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
EST: CGACGTCAATCACTTCGCATCG GACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGAEST: gi|86418726|gb|CI053527.1|CI053527
genomic: CGACGTCAATCACTTCGCATCGgtacgcatgc ... tgatgtgcagGACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
EST: TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCG GACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGAEST: gi|88516704|gb|CI444358.1|CI444358
genomic: TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCGgtacgcatgc ... tgatgtgcagGACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
EST: TCGTNCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCG GACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
genomic: TCGTGCGCGCCGACGAGGCTCACCACCGCGACGTCAATCACTTCGCATCGgtacgcatgc ... tgatgtgcagGACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGA
ggatgtatgttgaattggttctgacgtgtgatctggtctggcttgtgatgtgcagGACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGATATCACTGAGGATGTTTGTCTACTGCCGAGGATTTGCATCACTAATAAT
ttctgac putative branch site (score: 9)
ttgaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgcatgcatgatcagcgatcttgctctttgatctcgccttttggggatgtatgttgaattggttctgacgtgtgatctggtctggcttgtgatgtgcagGACATCCATTACCAGGGCATGGAGCTGAAGCAGACCCCTGCGCCGATCGGATATCACTGAGGATGTTTGTCTACTGCCGAGGATTTGCATCACTAATAAT
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