1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtgagtgctcctatactatacgcaaaaatcaagatgtgatatactgacatacacgtttatgactatgtactgacatacacggatatgtacgtacgcagGTGGAGCATGAAACGATTCTGAAGGACCGTGAGGCAGGCAGCGAGCTAGATAGAATCACATGGAAGGAGTACAAATCCATGGCATTCACATCTCAG
species | Oryza sativa |
transcript | LOC_Os04g48210.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AAGCTGCTCGCCGACCACCCTCTCGTCCTGCAGGAGCTCACG GTGGAGCATGAAACGATTCTGAAGGACCGTGAGGCAGGCAGCGAGCTACATEST: gi|88671466|gb|CI725582.1|CI725582
genomic: AAGCTGCTCGCCGACCACCCTCTCGTCCTGGAGGAGCTCACGgtgagtgctc ... acgtacgcagGTGGAGCATGAAACGATTCTGAAGGACCGTGAGGCAGGCAGCGAGCTAGAT
EST: AAGCTGCTCGCCGACCACCCTCTCGTCCTGGAGGAGCTCACG GTGGAGCATGAAACGATTCTGAAGGACCGTGAGGCAGGCAGCGAGCTAGATEST: gi|88972545|gb|CI717285.1|CI717285
genomic: AAGCTGCTCGCCGACCACCCTCTCGTCCTGGAGGAGCTCACGgtgagtgctc ... acgtacgcagGTGGAGCATGAAACGATTCTGAAGGACCGTGAGGCAGGCAGCGAGCTAGAT
EST: AAGCTGCTCGCCGACCACCCTCTCGTCCTGCAGGAGCTCACG GTGGAGCATGAAACGATTCTGAAGGACCGTGAGGCAGGCAGCGAGCTAGATEST: gi|88672624|gb|CI726740.1|CI726740
genomic: AAGCTGCTCGCCGACCACCCTCTCGTCCTGGAGGAGCTCACGgtgagtgctc ... acgtacgcagGTGGAGCATGAAACGATTCTGAAGGACCGTGAGGCAGGCAGCGAGCTAGAT
EST: AAGCTGCTCGCCGACCACCCTCTCGTCCTGCAGGAGCTCACG GTGGAGCATGAAACGATTCTGAAGGACCGTGAGGCAGGCAGNGAGCTAGAT
genomic: AAGCTGCTCGCCGACCACCCTCTCGTCCTGGAGGAGCTCACGgtgagtgctc ... acgtacgcagGTGGAGCATGAAACGATTCTGAAGGACCGTGAGGCAGGCAGCGAGCTAGAT
ctgacatacacgtttatgactatgtactgacatacacggatatgtacgtacgcagGTGGAGCATGAAACGATTCTGAAGGACCGTGAGGCAGGCAGCGAGCTAGATAGAATCACATGGAAGGAGTACAAATCCATGGCATTCACATCTCAG
tactgac putative branch site (score: 1)
tttatga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtgctcctatactatacgcaaaaatcaagatgtgatatactgacatacacgtttatgactatgtactgacatacacggatatgtacgtacgcagGTGGAGCATGAAACGATTCTGAAGGACCGTGAGGCAGGCAGCGAGCTAGATAGAATCACATGGAAGGAGTACAAATCCATGGCATTCACATCTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG