1 5' 3' | 2 5' 3' | 3 5' 3' |
...agttttttaactctataatgttagtttgccatactgaacttgaacagcttatacctggccattgctagcactaacatttatatgctctgattccgagcagGTTTTATGCTGCAGAAGTACTTCTAGCTCTGGAGTATCTACACATGTTGGGAGTTGTTTACAGGGATCTGAAGCCAGAGAACGTTCTTGTTCGTGATGAT
species | Oryza sativa |
transcript | LOC_Os04g46180.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ACGCTGCGACAGAGACAGGCAGGAAAACATTTCTCCGAGTATGCTGCAAG GTTTTATGCTGCAGAAGTACTTCTAGCTCTGGAGTATCTACACATGTTGGGEST: gi|29630267|gb|CB635276.1|CB635276
genomic: ACGCTGCGACAGAGACAGGCAGGAAAACATTTCTCCGAGTATGCTGCAAGgtgatctatt ... ttccgagcagGTTTTATGCTGCAGAAGTACTTCTAGCTCTGGAGTATCTACACATGTTGGG
EST: ACGCTGCGACAGAGACAGGCAGGAAAACATTTCTCCGAGTATGCTGCAAG GTTTTATGCTGCAGAAGTACTTCTAGCTCTGGAGTATCTACACATGTTGGGEST: gi|58659787|gb|CK048467.1|CK048467
genomic: ACGCTGCGACAGAGACAGGCAGGAAAACATTTCTCCGAGTATGCTGCAAGgtgatctatt ... ttccgagcagGTTTTATGCTGCAGAAGTACTTCTAGCTCTGGAGTATCTACACATGTTGGG
EST: ACGCTGCGACAGAGACAGGCAGGAAAACATTTCTCCGAGTATGCTGCAAG GTTTTATGCTGCAGAAGTACTTCTAGCTCTGGAGTATCTACACATGTTGGGEST: gi|58683273|gb|CK071960.1|CK071960
genomic: ACGCTGCGACAGAGACAGGCAGGAAAACATTTCTCCGAGTATGCTGCAAGgtgatctatt ... ttccgagcagGTTTTATGCTGCAGAAGTACTTCTAGCTCTGGAGTATCTACACATGTTGGG
EST: CGCTGCGACAGAGACAGGCAGGAAAACATTTCTCCNGAGTATGCTGCAAG GTTTTATGCTGCAGAAGTACTTCTAGCTCTGGAGTATCTACACATGTTGGGEST: gi|29629374|gb|CB634385.1|CB634385
genomic: CGCTGCGACAGAGACAGGCAGGAAAACATTTCTCC-GAGTATGCTGCAAGgtgatctatt ... ttccgagcagGTTTTATGCTGCAGAAGTACTTCTAGCTCTGGAGTATCTACACATGTTGGG
EST: ACGCTGCGACAGAGACAGGCAGGAAAACATTTCTCCGAGTATGCTGCAAG GTTTTATGCTGCAGAAGTACTTCTAGCTCTGGAGTATCTACACATGTTGGG
genomic: ACGCTGCGACAGAGACAGGCAGGAAAACATTTCTCCGAGTATGCTGCAAGgtgatctatt ... ttccgagcagGTTTTATGCTGCAGAAGTACTTCTAGCTCTGGAGTATCTACACATGTTGGG
agcttatacctggccattgctagcactaacatttatatgctctgattccgagcagGTTTTATGCTGCAGAAGTACTTCTAGCTCTGGAGTATCTACACATGTTGGGAGTTGTTTACAGGGATCTGAAGCCAGAGAACGTTCTTGTTCGTGATGAT
actaacatttatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agttttttaactctataatgttagtttgccatactgaacttgaacagcttatacctggccattgctagcactaacatttatatgctctgattccgagcagGTTTTATGCTGCAGAAGTACTTCTAGCTCTGGAGTATCTACACATGTTGGGAGTTGTTTACAGGGATCTGAAGCCAGAGAACGTTCTTGTTCGTGATGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC