1 5' 3' | 2 5' 3' | 3 5' 3' |
gtgacaaaacggcaccaaatcaaactggatttgtaaccaattttttctccccctctccgttacagcaaatgcatcgtttttgctgcgcattgcagTGGATATTTGGATTCGTGGCGTTCTTCTACCCCGGCGCGGCGCCGCACGTGAGGCGCGGGGCGCTGCCGTGGCACGTGCTGTTCGGGCTGTTCGTCTACG
species | Oryza sativa |
transcript | LOC_Os04g45090.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCCTGCATTCCTGGCTCGGCATCGGAACAATCTCGCTGTACGGCATTCAG TGGATATTTGGATTCGTGGCGTTCTTCTACCCCGGCGCGGCGCCGCACGTGEST: gi|86261055|gb|CI004620.1|CI004620
genomic: GCCTGCATTCCTGGCTCGGCATCGGAACAATCTCGCTGTACGGCATTCAGgtgacaaaac ... cgcattgcagTGGATATTTGGATTCGTGGCGTTCTTCTACCCCGGCGCGGCGCCGCACGTG
EST: GCCTGCATTCCTGGCTCGGCATCGGAACAATCTCGCTGTACGGCATTCAG TGGATATTTGGATTCGTGGCGTTCTTCTACCCCGGCGCGGCGCCGCACGTGEST: gi|86513059|gb|CI155692.1|CI155692
genomic: GCCTGCATTCCTGGCTCGGCATCGGAACAATCTCGCTGTACGGCATTCAGgtgacaaaac ... cgcattgcagTGGATATTTGGATTCGTGGCGTTCTTCTACCCCGGCGCGGCGCCGCACGTG
EST: GCCTGCATTCCTGGCTCGGCATCGGAACAATCTCGCTGTACGGCATTCAG TGGATATTTGGATTCGTGGCGTTCTTCTACCCCGGCGCGGCGCCGCACGTGEST: gi|88836949|gb|CI008385.1|CI008385
genomic: GCCTGCATTCCTGGCTCGGCATCGGAACAATCTCGCTGTACGGCATTCAGgtgacaaaac ... cgcattgcagTGGATATTTGGATTCGTGGCGTTCTTCTACCCCGGCGCGGCGCCGCACGTG
EST: GCCTGCATTCCTGGCTCGGCATCGGAACAATCTCGCTGTACGGCATTCAG TGGATATTTGGATTCGTGGCGTTCTTCTACCCCGGCGCGGCGCCGCACGTG
genomic: GCCTGCATTCCTGGCTCGGCATCGGAACAATCTCGCTGTACGGCATTCAGgtgacaaaac ... cgcattgcagTGGATATTTGGATTCGTGGCGTTCTTCTACCCCGGCGCGGCGCCGCACGTG
ttttttctccccctctccgttacagcaaatgcatcgtttttgctgcgcattgcagTGGATATTTGGATTCGTGGCGTTCTTCTACCCCGGCGCGGCGCCGCACGTGAGGCGCGGGGCGCTGCCGTGGCACGTGCTGTTCGGGCTGTTCGTCTACG
ttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgacaaaacggcaccaaatcaaactggatttgtaaccaattttttctccccctctccgttacagcaaatgcatcgtttttgctgcgcattgcagTGGATATTTGGATTCGTGGCGTTCTTCTACCCCGGCGCGGCGCCGCACGTGAGGCGCGGGGCGCTGCCGTGGCACGTGCTGTTCGGGCTGTTCGTCTACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT