1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...cacctatcagtacttggtaatcatgaggttatgcttctggtttgcgagaacaagtctgtgagaagtactcaagagattttgcatctttatgatcttgcagGACCAGTAGTCATGGACTTAGCTGGGTTTACAGAACAAGGTTTTAAGCGTAAGCTTGCTGTGCAAACGTTGTTCGGAAAAATCCTGTACTTATCAGAG
species | Oryza sativa |
transcript | LOC_Os04g44560.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGTTGCTGAAATTTTGAATGAGATTTCAAGACGAATTGTTCGGGAAAAAG GACCAGTAGTCATGGACTTAGCTGGGTTTACAGAACAAGGTTTTAAGCGTAEST: gi|2798129|gb|AA751423.1|AA751423
genomic: AGTTGCTGAAATTTTGAATGAGATTTCAAGACGAATTGTTCGGGAAAAAGgtattgctca ... gatcttgcagGACCAGTAGTCATGGACTTAGCTGGGTTTACAGAACAAGGTTTTAAGCGTA
EST: AGTTGCTGAAATTTTGAATGAGATTTCAAGACGAATTGTTCGGGAAAAAG GACCAGTAGTCATGGACTTAGCTGGGTTTACAGAACAAGGTTTTAAGCGTAEST: gi|29686490|gb|CB682765.1|CB682765
genomic: AGTTGCTGAAATTTTGAATGAGATTTCAAGACGAATTGTTCGGGAAAAAGgtattgctca ... gatcttgcagGACCAGTAGTCATGGACTTAGCTGGGTTTACAGAACAAGGTTTTAAGCGTA
EST: AGTTGCTGAAATTTTGAATGAGATTTCAAGACGAATTGTTCGGGAAAAAG GACCAGTAGTCATGGACTTAGCTGGGTTTACAGAACAAGGTTTTAAGCGTAEST: gi|86497551|gb|CI140184.1|CI140184
genomic: AGTTGCTGAAATTTTGAATGAGATTTCAAGACGAATTGTTCGGGAAAAAGgtattgctca ... gatcttgcagGACCAGTAGTCATGGACTTAGCTGGGTTTACAGAACAAGGTTTTAAGCGTA
EST: AGTTGCTGAAATTTTGAATGAGATTTCAAGACGAATTGTTCGGGAAAAAG GACCAGTAGTCAGGGACTTAGCTGGGTTTACAGAACAAGGTTTTAAGCGTAEST: gi|29686489|gb|CB682764.1|CB682764
genomic: AGTTGCTGAAATTTTGAATGAGATTTCAAGACGAATTGTTCGGGAAAAAGgtattgctca ... gatcttgcagGACCAGTAGTCATGGACTTAGCTGGGTTTACAGAACAAGGTTTTAAGCGTA
EST: AGTTGCTGAAATTTTGAATGAGATTTCAAGACGAATTGTTCGGGAAAAAG GACCAGTAGTCATGGACTTAGCTGGGTTTACAGAACAAGGTTTTAAGCGTAEST: gi|44675716|gb|CR289150.1|CR289150
genomic: AGTTGCTGAAATTTTGAATGAGATTTCAAGACGAATTGTTCGGGAAAAAGgtattgctca ... gatcttgcagGACCAGTAGTCATGGACTTAGCTGGGTTTACAGAACAAGGTTTTAAGCGTA
EST: AATTTTGAATGAG-TGTCAAAG-CG-ATTGTTCGGGAAAAAG GACCAGTAGTCATGGACTTAGCTGGGTTTACAGGACAAGGTTTTAAGCGTA
genomic: AATTTTGAATGAGATTTC-AAGACGAATTGTTCGGGAAAAAGgtattgctca ... gatcttgcagGACCAGTAGTCATGGACTTAGCTGGGTTTACAGAACAAGGTTTTAAGCGTA
gagaacaagtctgtgagaagtactcaagagattttgcatctttatgatcttgcagGACCAGTAGTCATGGACTTAGCTGGGTTTACAGAACAAGGTTTTAAGCGTAAGCTTGCTGTGCAAACGTTGTTCGGAAAAATCCTGTACTTATCAGAG
atctttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cacctatcagtacttggtaatcatgaggttatgcttctggtttgcgagaacaagtctgtgagaagtactcaagagattttgcatctttatgatcttgcagGACCAGTAGTCATGGACTTAGCTGGGTTTACAGAACAAGGTTTTAAGCGTAAGCTTGCTGTGCAAACGTTGTTCGGAAAAATCCTGTACTTATCAGAG
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