1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaatccggtgatatcaccaccgttatttgggccaacttccatagtactcctcgtgcatattactactcaccttttctgatttgacaatagaaaatggcatatctttgcagGAGTCGTCCAGGCTGAAGGAGATCCCTGTGGTGATCATGTCCTCGGAGAACGTCTCTACAAGGATCAACAG
species | Oryza sativa |
transcript | LOC_Os04g44280.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGAAGGTCAAG GAGTCGTCCAGGCTGAAGGAGATCCCTGTGGTGATCATGTCCTCGGGGAACEST: gi|86883956|gb|CI309919.1|CI309919
genomic: AGAAGGTCAAGgtaatccggt ... atctttgcagGAGTCGTCCAGGCTGAAGGAGATCCCTGTGGTGATCATGTCCTCGGAGAAC
EST: ACTACTGGATGCCGGAGATGACCGGGTATGAACTCCTGAAGAAGGTCAAG GAGTCGTCCAGGCTGAAGGAGATCCCTGTGGTGATCATGTCCTCGGAGAACEST: gi|86425798|gb|CI070895.1|CI070895
genomic: ACTACTGGATGCCGGAGATGACCGGGTATGAACTCCTGAAGAAGGTCAAGgtaatccggt ... atctttgcagGAGTCGTCCAGGCTGAAGGAGATCCCTGTGGTGATCATGTCCTCGGAGAAC
EST: CTGGATGCCGGAGATGACCGGGTATGAACTCCTGAAGAAGGTCAAG GAGTCGTCCAGGCTGAAGGAGATCCCTGTGGTGATCATGTCCTCGGAGAAC
genomic: CTGGATGCCGGAGATGACCGGGTATGAACTCCTGAAGAAGGTCAAGgtaatccggt ... atctttgcagGAGTCGTCCAGGCTGAAGGAGATCCCTGTGGTGATCATGTCCTCGGAGAAC
catattactactcaccttttctgatttgacaatagaaaatggcatatctttgcagGAGTCGTCCAGGCTGAAGGAGATCCCTGTGGTGATCATGTCCTCGGAGAACGTCTCTACAAGGATCAACAG
tatcttt CT-rich tract
aatagaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatccggtgatatcaccaccgttatttgggccaacttccatagtactcctcgtgcatattactactcaccttttctgatttgacaatagaaaatggcatatctttgcagGAGTCGTCCAGGCTGAAGGAGATCCCTGTGGTGATCATGTCCTCGGAGAACGTCTCTACAAGGATCAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA