Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatattaccacaccatatacattaacctacgacttcaatgtgatgaattattgtttcatggtttatattttatttgaatttattgtgttcgattctttcagGATCCACTCAAAATTCTATTAGGGTTGCTCAG

Basic information

species Oryza sativa
transcript LOC_Os04g43750.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os04g43750.1 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G089767_T01 (Zea mays), 3'ss of exon 1
gtaatattaccacaccatatacattaacctacgacttcaatgtgatgaattattgtttcatggtttatattttatttga----atttattgtgttcgattctttcagGATCCACTCAAAATTCTATTAGGGTTGCTCAG
                        |||  |   | | |||    ||| |||| || |||||| || ||  | | | |      |||| | ||||||  ||||||||||| |||||||||| ||||| |||||||| || 
-----------------------gtaa--tgttagtgcaaatgcatggattactgcttcatgattcattctctctcttctactatttgtagtgttcttttctttcagGAGCCACTCAAAACTCTATCAGGGTTGCCCAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attattgtttcatggtttatattttatttgaatttattgtgttcgattctttcagGATCCACTCAAAATTCTATTAGGGTTGCTCAG
                                              ttctttc  CT-rich tract
       tttcatggtttatatt  TA-rich tract