1 5' 3' | 2 5' 3' | 3 5' 3' |
gtgagtatcaaaaactactctgaatttgtctgaaaatataactgaagtttctgcagctgctgaactgaaaccgcatcactcttgcagGTATCTCTCGCTCCGGCTGGACGGCCGCGTCCGTGGCAGCGGCGTCGGGTACCCGCCGTGGCAAGCGTTCGTGGCGCAGCTGCCGCCGGTGAAGGGGATG
species | Oryza sativa |
transcript | LOC_Os04g42800.3 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGGCTAGATGAGCAGAAGAAGCTAGCCAACGTGTCACCTGATTCCCCCGT GTATCTCTCGCTCCGGCTGGACGGCCGCGTCCGTGGCAGCGGCGTCGGGTAEST: gi|29639240|gb|CB644249.1|CB644249
genomic: TGGCTAGATGAGCAGAAGAAGCTAGCCAACGTGTCACCTGATTCCCCCGTgtgagtatca ... actcttgcagGTATCTCTCGCTCCGGCTGGACGGCCGCGTCCGTGGCAGCGGCGTCGGGTA
EST: TGGCTAGATGAGCAGAAGAAGCTAGCCAACGTGTCACCTGATTCCCCCGT GTATCTCTCGCTCCGGCTGGACGGCCGCGTCCGTGGCAGCGGCGTCGGGTAEST: gi|88218068|gb|CI217917.1|CI217917
genomic: TGGCTAGATGAGCAGAAGAAGCTAGCCAACGTGTCACCTGATTCCCCCGTgtgagtatca ... actcttgcagGTATCTCTCGCTCCGGCTGGACGGCCGCGTCCGTGGCAGCGGCGTCGGGTA
EST: TGGCTAGATGAGCAGAAGAAGCTAGCCAACGTGTCACCTGATTCCCCCGT GTATCTCTCGCTCCGGCTGGACGGCCGCGTCCGTGGCAGCGGCGTCGGGTAEST: gi|88980799|gb|CI022493.1|CI022493
genomic: TGGCTAGATGAGCAGAAGAAGCTAGCCAACGTGTCACCTGATTCCCCCGTgtgagtatca ... actcttgcagGTATCTCTCGCTCCGGCTGGACGGCCGCGTCCGTGGCAGCGGCGTCGGGTA
EST: TGGCTAGATGAGCAGAAGAAGCTAGCCAACGTGTCACCTGATTCCCCCGT GTATCTCTCGCTCCGGCTGGACGGCCGCGTCCGTGGCAGCGGCGTCGGGTAEST: gi|86254973|gb|CI017093.1|CI017093
genomic: TGGCTAGATGAGCAGAAGAAGCTAGCCAACGTGTCACCTGATTCCCCCGTgtgagtatca ... actcttgcagGTATCTCTCGCTCCGGCTGGACGGCCGCGTCCGTGGCAGCGGCGTCGGGTA
EST: TGGCTAGATGAGCAGAAGAAGCTAGCCAACGTGTCACCTGATTCCCCCGT GTATCTCTCGCTCCGGCTGGACGGCCGCGTCCGTGGCAGCGGCGTCGGGTA
genomic: TGGCTAGATGAGCAGAAGAAGCTAGCCAACGTGTCACCTGATTCCCCCGTgtgagtatca ... actcttgcagGTATCTCTCGCTCCGGCTGGACGGCCGCGTCCGTGGCAGCGGCGTCGGGTA
aaaatataactgaagtttctgcagctgctgaactgaaaccgcatcactcttgcagGTATCTCTCGCTCCGGCTGGACGGCCGCGTCCGTGGCAGCGGCGTCGGGTACCCGCCGTGGCAAGCGTTCGTGGCGCAGCTGCCGCCGGTGAAGGGGATG
atataac putative branch site (score: 3)
tcactctt putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtatcaaaaactactctgaatttgtctgaaaatataactgaagtttctgcagctgctgaactgaaaccgcatcactcttgcagGTATCTCTCGCTCCGGCTGGACGGCCGCGTCCGTGGCAGCGGCGTCGGGTACCCGCCGTGGCAAGCGTTCGTGGCGCAGCTGCCGCCGGTGAAGGGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC