1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tttactagtcctggaagatatctttagatgcctggttctagagttcctctgttaaaactacttaggtttctgcatatcctcagtttgctacttcttgcagGAACCTACATTGACAAGAAATGCCCATTCACTGGTACTGTATCAATTAGGGGTCGTATCATAGCTGGAACATGTCATAGTGCTAAGATGAACAGGACCAT
species | Oryza sativa |
transcript | LOC_Os04g42380.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTGGAAGAACATTGGCCTTGGGTTCAAGACACCCAGGGAAGCCATCGAAG GAACCTACATTGACAAGAAATGCCCATTCACTGGTACTGTATCAATTAGGGEST: gi|88396239|gb|CI598351.1|CI598351
genomic: CTGGAAGAACATTGGCCTTGGGTTCAAGACACCCAGGGAAGCCATCGAAGgtctgattat ... cttcttgcagGAACCTACATTGACAAGAAATGCCCATTCACTGGTACTGTATCAATTAGGG
EST: CTGGAAGAACATTGGCCTTGGGTTCAAGACACCCAGGGAAGCCATCGAAG GAACCTACATTGACAAGAAATGCCCATTCACTGGTACTGTATCAATTAGGGEST: gi|88347954|gb|CI636047.1|CI636047
genomic: CTGGAAGAACATTGGCCTTGGGTTCAAGACACCCAGGGAAGCCATCGAAGgtctgattat ... cttcttgcagGAACCTACATTGACAAGAAATGCCCATTCACTGGTACTGTATCAATTAGGG
EST: CTGGAAGAACATTGGCCTTGGGTTCAAGACACCCAGGGAAGCCATCGAAG GAACCTACATTGACAAGAAATGCCCATTCACTGGTACTGTATCAATTAGGGEST: gi|88363094|gb|CI616251.1|CI616251
genomic: CTGGAAGAACATTGGCCTTGGGTTCAAGACACCCAGGGAAGCCATCGAAGgtctgattat ... cttcttgcagGAACCTACATTGACAAGAAATGCCCATTCACTGGTACTGTATCAATTAGGG
EST: CTGGAAGAACATTGGCCTTGGGTTCAAGACACCCAGGGAAGCCATCGAAG GAACCTACATTGACAAGAAATGCCCATTCACTGGTACTGTATCAATTAGGGEST: gi|29629652|gb|CB634661.1|CB634661
genomic: CTGGAAGAACATTGGCCTTGGGTTCAAGACACCCAGGGAAGCCATCGAAGgtctgattat ... cttcttgcagGAACCTACATTGACAAGAAATGCCCATTCACTGGTACTGTATCAATTAGGG
EST: CTGGAAGAACATTGGCCTTGGGTTCAAGACACCCAGGGAAGCCATCGAAG GAACCTACATTGACAAGAAATGCCCATTCACTGGTACTGTATCAATTAGGGEST: gi|33653511|gb|CF276125.1|CF276125
genomic: CTGGAAGAACATTGGCCTTGGGTTCAAGACACCCAGGGAAGCCATCGAAGgtctgattat ... cttcttgcagGAACCTACATTGACAAGAAATGCCCATTCACTGGTACTGTATCAATTAGGG
EST: CTGGAAGAACATTGGCCTTGGGTTCAAGACACCCAGGGAAGCCATCGAAG GAACCTACATTGACAAGAAATGCCCATTCACTGGTACTGTATCAATTAGGGEST: gi|58596533|gb|CK007061.1|CK007061
genomic: CTGGAAGAACATTGGCCTTGGGTTCAAGACACCCAGGGAAGCCATCGAAGgtctgattat ... cttcttgcagGAACCTACATTGACAAGAAATGCCCATTCACTGGTACTGTATCAATTAGGG
EST: CTGGAAGAACATTGGCCTTGGGTTCAAGACACCCAGGGAAGCCATCGAAG GAACCTACATTGACAAGAAATGCCCATTCACTGGTACTGTATCAATTAGGGEST: gi|88765515|gb|CI774609.1|CI774609
genomic: CTGGAAGAACATTGGCCTTGGGTTCAAGACACCCAGGGAAGCCATCGAAGgtctgattat ... cttcttgcagGAACCTACATTGACAAGAAATGCCCATTCACTGGTACTGTATCAATTAGGG
EST: CTGGAAGAACATTGGCCTTGGGTTCAAGACACCCAGGGAAGCCATCGAAG GAACCTACATTGACAAGAAATGCCCATTCACTGGTACTGTATCAATTAGGGEST: gi|88511630|gb|CI439136.1|CI439136
genomic: CTGGAAGAACATTGGCCTTGGGTTCAAGACACCCAGGGAAGCCATCGAAGgtctgattat ... cttcttgcagGAACCTACATTGACAAGAAATGCCCATTCACTGGTACTGTATCAATTAGGG
EST: CAGGGAAGCCATCGAAG GAACCTACATTGACAAGAAATGCCCATTCACTGGTACTGTATCAATTAGGGEST: gi|33655599|gb|CF278213.1|CF278213
genomic: CAGGGAAGCCATCGAAGgtctgattat ... cttcttgcagGAACCTACATTGACAAGAAATGCCCATTCACTGGTACTGTATCAATTAGGG
EST: CTGGAAGAACATTGGCCTTGGGTTCAAGACACCCAGGGAAGCCATCGAAG GAACCTACATTGACAAGAAATGCCCATTCACTGGTACTGTATCAATTAGGGEST: gi|218494166|gb|FG952748.1|FG952748
genomic: CTGGAAGAACATTGGCCTTGGGTTCAAGACACCCAGGGAAGCCATCGAAGgtctgattat ... cttcttgcagGAACCTACATTGACAAGAAATGCCCATTCACTGGTACTGTATCAATTAGGG
EST: CTGGAAGAACATTGGCCTTGGGTTCAAGACACCCAGGGAAGCCATCGAAG GAACCTACATTGACAAGAAATGCCCATTCACTGGTACTGTATCAATTAGGGEST: gi|88451487|gb|CI565540.1|CI565540
genomic: CTGGAAGAACATTGGCCTTGGGTTCAAGACACCCAGGGAAGCCATCGAAGgtctgattat ... cttcttgcagGAACCTACATTGACAAGAAATGCCCATTCACTGGTACTGTATCAATTAGGG
EST: CTGGAAGAACATTGGCCTTGGGTTCAAGACACCCAGGGAAGCCATCGAAG GAACCTACATTGACAAGAAATGCCCATTCACTGGTACTGTATCAATTAGGGEST: gi|8404565|gb|AU091919.1|AU091919
genomic: CTGGAAGAACATTGGCCTTGGGTTCAAGACACCCAGGGAAGCCATCGAAGgtctgattat ... cttcttgcagGAACCTACATTGACAAGAAATGCCCATTCACTGGTACTGTATCAATTAGGG
EST: CTGGAAGAACATTGGCCTTGGGTTCAAGACACCCAGGGAAGCCATCGAAG GAACCTACATTGACAAGAAATGCCCATTCACTGGTACTGTATCAATTAGGGEST: gi|88329106|gb|CI658767.1|CI658767
genomic: CTGGAAGAACATTGGCCTTGGGTTCAAGACACCCAGGGAAGCCATCGAAGgtctgattat ... cttcttgcagGAACCTACATTGACAAGAAATGCCCATTCACTGGTACTGTATCAATTAGGG
EST: CTGGAAGAACATTGGCCTTGGGTTCAAGACACCCAGGGAAGCCATCGAAG GAACCTACATTGACAAGAAATGCCCATTCACTGGTACTGTATCAATTAGGGEST: gi|88722377|gb|CI745887.1|CI745887
genomic: CTGGAAGAACATTGGCCTTGGGTTCAAGACACCCAGGGAAGCCATCGAAGgtctgattat ... cttcttgcagGAACCTACATTGACAAGAAATGCCCATTCACTGGTACTGTATCAATTAGGG
EST: CTGGAAGAACATTGGCCTTGGGTTCAAGACACCCAGGGAAGCCATCGAAG GAACCTACATTGACAAGAAATGCCCATTCACTGGTACTGTATCAATTAGGGEST: gi|58604496|gb|CK015024.1|CK015024
genomic: CTGGAAGAACATTGGCCTTGGGTTCAAGACACCCAGGGAAGCCATCGAAGgtctgattat ... cttcttgcagGAACCTACATTGACAAGAAATGCCCATTCACTGGTACTGTATCAATTAGGG
EST: CTGGAAGAACATTGGCCTTGGGTTCAAGACACCCAGGGAAGCCATCGAAG GAACCTACATTGACAAGAAATGCCCATTCACTGGTACTGTATCAATTAGGGEST: gi|38468664|gb|CF952795.1|CF952795
genomic: CTGGAAGAACATTGGCCTTGGGTTCAAGACACCCAGGGAAGCCATCGAAGgtctgattat ... cttcttgcagGAACCTACATTGACAAGAAATGCCCATTCACTGGTACTGTATCAATTAGGG
EST: CTGGAAGAACATTGGCCTTGGGTTCAAGAGACCCAGGGAAGCCATCGAAG GAACCTACATTGACAAGAAATGCCCATTCACTGGTACTGTATCAATTAGGGEST: gi|29629653|gb|CB634662.1|CB634662
genomic: CTGGAAGAACATTGGCCTTGGGTTCAAGACACCCAGGGAAGCCATCGAAGgtctgattat ... cttcttgcagGAACCTACATTGACAAGAAATGCCCATTCACTGGTACTGTATCAATTAGGG
EST: CTGGAAGAACATTGGCCTTGGGTTCAAGACACCCAGGGAAGCCATCGAAG GAACCTACATTGACAAGAAATGCCCATTCACTGGTACTGTATCAATTAGGGEST: gi|29682482|gb|CB678757.1|CB678757
genomic: CTGGAAGAACATTGGCCTTGGGTTCAAGACACCCAGGGAAGCCATCGAAGgtctgattat ... cttcttgcagGAACCTACATTGACAAGAAATGCCCATTCACTGGTACTGTATCAATTAGGG
EST: CTGGAAGAACATTGGCCTTGGGTTCAAGACACCCAGGGAAGCCATCGAAG GAACCTACATTGACAAGAAATGCCCATTCACTGGTACTGTATCAATTAGGGEST: gi|86887857|gb|CI297968.1|CI297968
genomic: CTGGAAGAACATTGGCCTTGGGTTCAAGACACCCAGGGAAGCCATCGAAGgtctgattat ... cttcttgcagGAACCTACATTGACAAGAAATGCCCATTCACTGGTACTGTATCAATTAGGG
EST: CTGGAAGAACATTGGCCTTGGGTTCAAGACACCCAGGGAAGCCATCGAAG GAACCTACATTGACAAGAAATGCCCATTCACTGGTACTGTATCAATTAGGGEST: gi|86901952|gb|CI298599.1|CI298599
genomic: CTGGAAGAACATTGGCCTTGGGTTCAAGACACCCAGGGAAGCCATCGAAGgtctgattat ... cttcttgcagGAACCTACATTGACAAGAAATGCCCATTCACTGGTACTGTATCAATTAGGG
EST: CTGGAAGAACATTGGCCTTGGGTTCAAGACACCCAGGGAAGCCATCGAAG GAACCTACATTGACAAGAAATGCCCATTCACTGGTACTGTATCAATTAGGGEST: gi|88325214|gb|CI646636.1|CI646636
genomic: CTGGAAGAACATTGGCCTTGGGTTCAAGACACCCAGGGAAGCCATCGAAGgtctgattat ... cttcttgcagGAACCTACATTGACAAGAAATGCCCATTCACTGGTACTGTATCAATTAGGG
EST: CTGGAAGAACATTGGCCTTGGGTTCAAGACACCCAGGGAAGCCATCGAAG GAACCTACATTGACAAGAAATGCCCATTCACTGGTACTGTATCAATTAGGGEST: gi|88571463|gb|CI662836.1|CI662836
genomic: CTGGAAGAACATTGGCCTTGGGTTCAAGACACCCAGGGAAGCCATCGAAGgtctgattat ... cttcttgcagGAACCTACATTGACAAGAAATGCCCATTCACTGGTACTGTATCAATTAGGG
EST: CTGGAAGAACATTGGCCTTGGGTTCAAGACACCCAGGGAAGCCATCGAAG GAACCTACATTGACAAGAAATGCCCATTCACTGGTACTGTATCAATTAGGGEST: gi|29682483|gb|CB678758.1|CB678758
genomic: CTGGAAGAACATTGGCCTTGGGTTCAAGACACCCAGGGAAGCCATCGAAGgtctgattat ... cttcttgcagGAACCTACATTGACAAGAAATGCCCATTCACTGGTACTGTATCAATTAGGG
EST: CTGGAAGAACATTGGCCTTGGGTTCAAGACACCCAGGGAAGCCATCGAAG GAACCTACATTGACAAGAAATGCCCATTCACTGGTACTGTATCAATTAGGGEST: gi|27410185|gb|CA923255.1|CA923255
genomic: CTGGAAGAACATTGGCCTTGGGTTCAAGACACCCAGGGAAGCCATCGAAGgtctgattat ... cttcttgcagGAACCTACATTGACAAGAAATGCCCATTCACTGGTACTGTATCAATTAGGG
EST: CCGGAAGAACATTGGCCTTGGGTTCAAGACACCCAGGGAAGCCATCGAAG GAACCTACATTGACAAGAAATGCCCATTCACTGGTEST: gi|163929347|gb|EG713772.1|EG713772
genomic: CTGGAAGAACATTGGCCTTGGGTTCAAGACACCCAGGGAAGCCATCGAAGgtctgattat ... cttcttgcagGAACCTACATTGACAAGAAATGCCCATTCACTGGT
EST: CTGGAAGAACATTGGCCTTGGGTTCAAGACACCCAGGGAAGCCATCGAAG GAACCTACATTGACAAGAAATGCCCATTCACTGGTACTGTATCAATTAGGGEST: gi|88299875|gb|CI579936.1|CI579936
genomic: CTGGAAGAACATTGGCCTTGGGTTCAAGACACCCAGGGAAGCCATCGAAGgtctgattat ... cttcttgcagGAACCTACATTGACAAGAAATGCCCATTCACTGGTACTGTATCAATTAGGG
EST: CTGGAAGAACATTGGCCTTGGGTTCAAGACACCCAGGGAAGCCATCGAAG GAACCTACATTGACAAGAAATGCCCATTCACTGGTACTGTATCAATTAGGGEST: gi|88343902|gb|CI654938.1|CI654938
genomic: CTGGAAGAACATTGGCCTTGGGTTCAAGACACCCAGGGAAGCCATCGAAGgtctgattat ... cttcttgcagGAACCTACATTGACAAGAAATGCCCATTCACTGGTACTGTATCAATTAGGG
EST: CTGGAAGAACATTGGCCTTGGGTTCAAGACACCCAGGGAAGCCATCGAAG GAACCTACATTGACAAGAAATGCCCATTCACTGGTACTGTATCAATTAGGGEST: gi|88827779|gb|CI778344.1|CI778344
genomic: CTGGAAGAACATTGGCCTTGGGTTCAAGACACCCAGGGAAGCCATCGAAGgtctgattat ... cttcttgcagGAACCTACATTGACAAGAAATGCCCATTCACTGGTACTGTATCAATTAGGG
EST: CTGGAAGAACATTGGCCTTGGGTTCAAGACACCCAGGGAAGCCATCGAAG GAACCTACATTGACAAGAAATGCCCATTCACTGGTACTGTATCAATTAGGG
genomic: CTGGAAGAACATTGGCCTTGGGTTCAAGACACCCAGGGAAGCCATCGAAGgtctgattat ... cttcttgcagGAACCTACATTGACAAGAAATGCCCATTCACTGGTACTGTATCAATTAGGG
cctctgttaaaactacttaggtttctgcatatcctcagtttgctacttcttgcagGAACCTACATTGACAAGAAATGCCCATTCACTGGTACTGTATCAATTAGGGGTCGTATCATAGCTGGAACATGTCATAGTGCTAAGATGAACAGGACCAT
ctacttctt CT-rich tract
ttaaaacta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttactagtcctggaagatatctttagatgcctggttctagagttcctctgttaaaactacttaggtttctgcatatcctcagtttgctacttcttgcagGAACCTACATTGACAAGAAATGCCCATTCACTGGTACTGTATCAATTAGGGGTCGTATCATAGCTGGAACATGTCATAGTGCTAAGATGAACAGGACCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - tcctgga
- - - - - - - - - - - - - -atgcctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - aaactac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttctgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttgcta