1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...cctgtttaataatctcgcttacaagtatttataagttaatctaatttcttgtgtcatcaacatttgaaagttaatatgatttctactgtttctttcgcagGATGACCTAGAAGGCAAAAATGACAACTATGAAGTTGAAGACATGACTTTTGCACATGAGGAAGAAGTTTTCCAAGCACCAGATATTGCTGGTTCAACCA
species | Oryza sativa |
transcript | LOC_Os04g41910.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATGGTACTGTTTACAAGTGGGATCGTGTCCTGAGGGCATGGGTTCCTCAA GATGACCTAGAAGGCAAAAATGACAACTATGAAGTTGAAGACATGACTTTTEST: gi|29676260|gb|CB672535.1|CB672535
genomic: ATGGTACTGTTTACAAGTGGGATCGTGTCCTGAGGGCATGGGTTCCTCAAgtgagtgctt ... tctttcgcagGATGACCTAGAAGGCAAAAATGACAACTATGAAGTTGAAGACATGACTTTT
EST: ATGGTACTGTTTACAAGTGGGATCGTGTCCTGAGGGCATGGGTTCCTCAA GATGACCTAGAAGGCAAAAATGACAACTATGAAGTTGAAGACATGACTTTT
genomic: ATGGTACTGTTTACAAGTGGGATCGTGTCCTGAGGGCATGGGTTCCTCAAgtgagtgctt ... tctttcgcagGATGACCTAGAAGGCAAAAATGACAACTATGAAGTTGAAGACATGACTTTT
ttcttgtgtcatcaacatttgaaagttaatatgatttctactgtttctttcgcagGATGACCTAGAAGGCAAAAATGACAACTATGAAGTTGAAGACATGACTTTTGCACATGAGGAAGAAGTTTTCCAAGCACCAGATATTGCTGGTTCAACCA
agttaat putative branch site (score: 20)
tttctactgtttcttt putative PPT
atttgaaagttaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cctgtttaataatctcgcttacaagtatttataagttaatctaatttcttgtgtcatcaacatttgaaagttaatatgatttctactgtttctttcgcagGATGACCTAGAAGGCAAAAATGACAACTATGAAGTTGAAGACATGACTTTTGCACATGAGGAAGAAGTTTTCCAAGCACCAGATATTGCTGGTTCAACCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - gcttaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - -atcaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tactgtt