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...tttttctcttgcctgtttgtgatggtttttacctgtcattacttagaacacatgaatatcatcagctgttcaatactaatacattttgttcacttgacagTTGACATGTGGAATTTGTTTCGAAAATTGTCCTCGTACGTCAATGAGTGCTGCTGCATGTGGCCATCCGTTCTGTAGTGCATGTTGGAGAG
species | Oryza sativa |
transcript | LOC_Os04g41470.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CGAAATGCCAAATGACAGAGAA TTGACATGTGGAATTTGTTTCGAAAATTGTCCTCGTACGTCAATGAGTGCTEST: gi|29623493|gb|CB628504.1|CB628504
genomic: CGAAATGCCAAATGACAGAGAAgtatgccttt ... cacttgacagTTGACATGTGGAATTTGTTTCGAAAATTGTCCTCGTACGTCAATGAGTGCT
EST: AGGTTGTTGGTTTTCCGGAAAAGCTCATCGAAATGCCAAATGACAGAGAA TTGACATGTGGAATTTGTTTCGAAAATTGTCCTCGTACGTCAATGAGTGCTEST: gi|58674128|gb|CK062814.1|CK062814
genomic: AGGTTGTTGGTTTTCCGGAAAAGCTCATCGAAATGCCAAATGACAGAGAAgtatgccttt ... cacttgacagTTGACATGTGGAATTTGTTTCGAAAATTGTCCTCGTACGTCAATGAGTGCT
EST: GGTTAGTTGGTTTTCCGGAAAAGCTCATCGAAATGCCAAATGACAGAGAA TTGACATGTGGAATATGTTTCGAAAATTGTCCTCGTACGTCAATGAGTGCT
genomic: GGTT-GTTGGTTTTCCGGAAAAGCTCATCGAAATGCCAAATGACAGAGAAgtatgccttt ... cacttgacagTTGACATGTGGAATTTGTTTCGAAAATTGTCCTCGTACGTCAATGAGTGCT
gaacacatgaatatcatcagctgttcaatactaatacattttgttcacttgacagTTGACATGTGGAATTTGTTTCGAAAATTGTCCTCGTACGTCAATGAGTGCTGCTGCATGTGGCCATCCGTTCTGTAGTGCATGTTGGAGAG
tactaat putative branch site (score: 1)
ttttgttc putative PPT
aatactaatacatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttttctcttgcctgtttgtgatggtttttacctgtcattacttagaacacatgaatatcatcagctgttcaatactaatacattttgttcacttgacagTTGACATGTGGAATTTGTTTCGAAAATTGTCCTCGTACGTCAATGAGTGCTGCTGCATGTGGCCATCCGTTCTGTAGTGCATGTTGGAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA