1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatttcgtttgacttgtgattttgcatccttgcaattactatatttttttcagaggtctcatgttggatttcctttcctgttgcagatacctataaaccttgatatatattatatttgatcatatctcatggtgaagctacttttattgcagATATTTAGAACACTTGGCACACCTAACGAGAAGATATGGCCTGGCTATGCCAAATTGCCGGGTGTAAAAGTCAATTTTGTCAAACAACC
species | Oryza sativa |
transcript | LOC_Os04g41100.4 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CCAAAGAACCATTATTTAATGGGAAAACTGAGTTTGAACAGC----T-AG ATATTTAGAACACTTGGCACACCTAACGAGAAGATATGGCCTGGCTATGCCEST: gi|29640024|gb|CB645033.1|CB645033
genomic: CCAAAGAACCATTATTTAATGGGAAAACTGAGTTTGAACAGCTAGATAAGgtatttcgtt ... tttattgcagATATTTAGAACACTTGGCACACCTAACGAGAAGATATGGCCTGGCTATGCC
EST: CCAAAGAACCATTATTTAATGGGAAAACTGAGTTTGAACAGCTAGATAAG ATATTTAGAACACTTGGCACACCTAACGAGAAGATATGGCCTGGCTATGCCEST: gi|58687429|gb|CK076116.1|CK076116
genomic: CCAAAGAACCATTATTTAATGGGAAAACTGAGTTTGAACAGCTAGATAAGgtatttcgtt ... tttattgcagATATTTAGAACACTTGGCACACCTAACGAGAAGATATGGCCTGGCTATGCC
EST: CCAAAGAACCATTATTTAATGGGAAAACTGAGTTTGAACAGCTAGATAAG ATATTTAGAACACTTGGCACACCTAACGAGAAGATATGGCCTGGCTATGCCEST: gi|29679248|gb|CB675523.1|CB675523
genomic: CCAAAGAACCATTATTTAATGGGAAAACTGAGTTTGAACAGCTAGATAAGgtatttcgtt ... tttattgcagATATTTAGAACACTTGGCACACCTAACGAGAAGATATGGCCTGGCTATGCC
EST: CCAAAGAACCATTATTTAATGGGAAAACTGAGTTTGAACAGCTAGATAAG ATATTTAGAACACTTGGCACACCTAACGAGAAGATATGGCCTGGCTATGCC
genomic: CCAAAGAACCATTATTTAATGGGAAAACTGAGTTTGAACAGCTAGATAAGgtatttcgtt ... tttattgcagATATTTAGAACACTTGGCACACCTAACGAGAAGATATGGCCTGGCTATGCC
ccttgatatatattatatttgatcatatctcatggtgaagctacttttattgcagATATTTAGAACACTTGGCACACCTAACGAGAAGATATGGCCTGGCTATGCCAAATTGCCGGGTGTAAAAGTCAATTTTGTCAAACAACC
atttgat putative branch site (score: 5)
ctactttt putative PPT
atatatattatatttg TA-rich tract