1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaagcgccattaccaccacctctacttcttcagtgttcagtgttcatcgcctctgctctcccccccaattcctcccagctcatccgcattcgtcgattgattgattgattgattgattgattttgcagGCATATTCGACGTGCTGGCGTACACCGACATGGACGTCGCGGTGCCCTTCACCTGGGTGGAGAGCGACGCCAAGCTCATCGAGAATCCACAGATGGTGAA
species | Oryza sativa |
transcript | LOC_Os04g40940.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCGCCAGGTCGCCTCCTGCATCACCTACCTCCCCTGCCTCGACGAGCCAT GCATATTCGACGTGCTGGCGTACACCGACATGGACGTCGCGGTGCCCTTCAEST: gi|163920022|gb|EG709828.1|EG709828
genomic: GCGCCAGGTCGCCTCCTGCATCACCTACCTCCCCTGCCTCGACGAGCCATgtaagcgcca ... gattttgcagGCATATTCGACGTGCTGGCGTACACCGACATGGACGTCGCGGTGCCCTTCA
EST: GCGCCAGGTCGCCTCCTGCATCACCTACCTCCCCTGCCTCGACGAGCCAT GCATATTCGACGTGCTGGCGTACACCGACATGGACGTCGCGGTGCCCTTCA
genomic: GCGCCAGGTCGCCTCCTGCATCACCTACCTCCCCTGCCTCGACGAGCCATgtaagcgcca ... gattttgcagGCATATTCGACGTGCTGGCGTACACCGACATGGACGTCGCGGTGCCCTTCA
cccagctcatccgcattcgtcgattgattgattgattgattgattgattttgcagGCATATTCGACGTGCTGGCGTACACCGACATGGACGTCGCGGTGCCCTTCACCTGGGTGGAGAGCGACGCCAAGCTCATCGAGAATCCACAGATGGTGAA
gattgat putative branch site (score: 4)
attgatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcgccattaccaccacctctacttcttcagtgttcagtgttcatcgcctctgctctcccccccaattcctcccagctcatccgcattcgtcgattgattgattgattgattgattgattttgcagGCATATTCGACGTGCTGGCGTACACCGACATGGACGTCGCGGTGCCCTTCACCTGGGTGGAGAGCGACGCCAAGCTCATCGAGAATCCACAGATGGTGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG