1 5' 3' | 2 5' 3' | 3 5' 3' |
...acccattttatatgtttggaccacccagttggttcatttttgtataccataattaattcaacgtggtttactaatccttatattcgccatcctgttgcagGTAATGTGGGTCAGGACCATGCTGTCTTTGAGCAAGGTGCTTCTGCAGGAAACGTCGGAAACGAGAACATCTTAGAGCAGAAGAAAGCAAACCCTATTGC
species | Oryza sativa |
transcript | LOC_Os04g40310.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CAGGTATTGCTGGAGGGACAGGTGTTATGCCTGGAG GTAATGTGGGTCAGGACCATGCTGTCTTTGAGCAAGGTGCTTCTGCAGGAAEST: gi|29687051|gb|CB683326.1|CB683326
genomic: CAGGTATTGCTGGAGGGACAGGTGTTATGCCTGGAGgtaggatctt ... cctgttgcagGTAATGTGGGTCAGGACCATGCTGTCTTTGAGCAAGGTGCTTCTGCAGGAA
EST: TGCTAACACGGCTGCAGGTATTGCTGGAGGGACAGGTGTTATGCCTGGAG GTAATGTGGGTCAGGACCATGCTGTCTTTGAGCAAGGTGCTTCTGCAGGAAEST: gi|29662276|gb|CB658551.1|CB658551
genomic: TGCTAACACGGCTGCAGGTATTGCTGGAGGGACAGGTGTTATGCCTGGAGgtaggatctt ... cctgttgcagGTAATGTGGGTCAGGACCATGCTGTCTTTGAGCAAGGTGCTTCTGCAGGAA
EST: TGCTAACACGGCTGCAGGTATTGCTGGAGGGACAGGTGTTATGCCTGGAG GTAATGTGGGTCAGGACCATGCTGTCTTTGAGCAAGGTGCTTCTGCAGGAAEST: gi|86428208|gb|CI074889.1|CI074889
genomic: TGCTAACACGGCTGCAGGTATTGCTGGAGGGACAGGTGTTATGCCTGGAGgtaggatctt ... cctgttgcagGTAATGTGGGTCAGGACCATGCTGTCTTTGAGCAAGGTGCTTCTGCAGGAA
EST: TTATGCCTGGAG GTAATGTGGGTCAGGACCATGCTGTCTTTGAGCAAGGTGCTTCTGCAGGAAEST: gi|87018960|gb|CI256845.1|CI256845
genomic: TTATGCCTGGAGgtaggatctt ... cctgttgcagGTAATGTGGGTCAGGACCATGCTGTCTTTGAGCAAGGTGCTTCTGCAGGAA
EST: TGCTAACACGGCTGCAGGTATTGCTGGAGGGACAGGTGTTATGCCTGGAG GTAATGTGGGTCAGGACCATGCTGTCTTTGAGCAAGGTGCTTCTGCAGGAAEST: gi|29662277|gb|CB658552.1|CB658552
genomic: TGCTAACACGGCTGCAGGTATTGCTGGAGGGACAGGTGTTATGCCTGGAGgtaggatctt ... cctgttgcagGTAATGTGGGTCAGGACCATGCTGTCTTTGAGCAAGGTGCTTCTGCAGGAA
EST: TGCTAACACGGCTGCAGGTATTGCTGGAGGGACAGGTGTTATGCCTGGAG GTAATGTGGGTCAGGACCATGCTGTCTTTGAGCAAGGTGCTTCTGCAGGAAEST: gi|29687448|gb|CB683723.1|CB683723
genomic: TGCTAACACGGCTGCAGGTATTGCTGGAGGGACAGGTGTTATGCCTGGAGgtaggatctt ... cctgttgcagGTAATGTGGGTCAGGACCATGCTGTCTTTGAGCAAGGTGCTTCTGCAGGAA
EST: TGCTAACACGGCTGCAGGTATTGCTGGAGGGACAGGTGTTATGCCTGGAG GTAATGTGGGTCAGGACCATGCTGTCTTTGAGCAAGGTGCTTCTGCAGGAA
genomic: TGCTAACACGGCTGCAGGTATTGCTGGAGGGACAGGTGTTATGCCTGGAGgtaggatctt ... cctgttgcagGTAATGTGGGTCAGGACCATGCTGTCTTTGAGCAAGGTGCTTCTGCAGGAA
accataattaattcaacgtggtttactaatccttatattcgccatcctgttgcagGTAATGTGGGTCAGGACCATGCTGTCTTTGAGCAAGGTGCTTCTGCAGGAAACGTCGGAAACGAGAACATCTTAGAGCAGAAGAAAGCAAACCCTATTGC
tactaat putative branch site (score: 1)
ccatcct putative PPT
aattaattcaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acccattttatatgtttggaccacccagttggttcatttttgtataccataattaattcaacgtggtttactaatccttatattcgccatcctgttgcagGTAATGTGGGTCAGGACCATGCTGTCTTTGAGCAAGGTGCTTCTGCAGGAAACGTCGGAAACGAGAACATCTTAGAGCAGAAGAAAGCAAACCCTATTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - -atgtttg
- - - - - - - - - - - - - - - - - - - - - - -accataa