1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaacattaccttttcacgatttcgtttccttgttgcttgtaagtgtactttcagcaactaaaaatcctgattgaattattgaagGGCTGGTAAATGCTCTAAAGCTTGTCCAACCTATCAAGGACAAATACCCAAATATCTCATATGCGGATTTATTCCAGCTGGCAAGTGCTACAGCAATTGA
species | Oryza sativa |
transcript | LOC_Os04g35520.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TAATGGAAGCTTGAGATTTGATGTTGAGTTAAAACATGGAGCCAATGCTG GGCTGGTAAATGCTCTAAAGCTTGTCCAACCTATCAAGGACAAATACCCAAEST: gi|58672863|gb|CK061549.1|CK061549
genomic: TAATGGAAGCTTGAGATTTGATGTTGAGTTAAAACATGGAGCCAATGCTGgtaacattac ... attattgaagGGCTGGTAAATGCTCTAAAGCTTGTCCAACCTATCAAGGACAAATACCCAA
EST: TAATGGAAGCTTGAGATTTGATGTTGAGTTAAAACATGGAGCCAATGCTG GGCTGGTAAATGCTCTAAAGCTTGTCCAACCTATCAAGGACAAATACCCAAEST: gi|33683886|gb|CF312125.1|CF312125
genomic: TAATGGAAGCTTGAGATTTGATGTTGAGTTAAAACATGGAGCCAATGCTGgtaacattac ... attattgaagGGCTGGTAAATGCTCTAAAGCTTGTCCAACCTATCAAGGACAAATACCCAA
EST: AAGCTTGAGATTTGATGTTGAGTTAAAACATGGAGCCAATGCTG GGCTGGTAAATGCTCTAAAGCTTGTCCAACCTATCAAGGACAAATACCCAA
genomic: AAGCTTGAGATTTGATGTTGAGTTAAAACATGGAGCCAATGCTGgtaacattac ... attattgaagGGCTGGTAAATGCTCTAAAGCTTGTCCAACCTATCAAGGACAAATACCCAA
ttgttgcttgtaagtgtactttcagcaactaaaaatcctgattgaattattgaagGGCTGGTAAATGCTCTAAAGCTTGTCCAACCTATCAAGGACAAATACCCAAATATCTCATATGCGGATTTATTCCAGCTGGCAAGTGCTACAGCAATTGA
attgaattattgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacattaccttttcacgatttcgtttccttgttgcttgtaagtgtactttcagcaactaaaaatcctgattgaattattgaagGGCTGGTAAATGCTCTAAAGCTTGTCCAACCTATCAAGGACAAATACCCAAATATCTCATATGCGGATTTATTCCAGCTGGCAAGTGCTACAGCAATTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG