1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gttagcaatgtttttaaagtaacagatctgaatttttatccttctggttttgtcccatgtactcacttcagtgatgttatacagAGGGGCGCGAGCTTCCCTATGGGAAAACTTCAAGAACAATCCATTATTCGACATTTCCACGGATCACCCTCCCACCTACTATGAAGACATGCAGCGTGCT
species | Oryza sativa |
transcript | LOC_Os04g32670.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGACTATTCTATGACACTGGAAATGACCCCGAGGGTGGTTACTATGCAAG AGGGGCGCGAGCTTCCCTATGGGAAAACTTCAAGAACAATCCATTATTCGAEST: gi|27577458|gb|CB000153.1|CB000153
genomic: GGACTATTCTATGACACTGGAAATGACCCCGAGGGTGGTTACTATGCAAGgttagcaatg ... tgttatacagAGGGGCGCGAGCTTCCCTATGGGAAAACTTCAAGAACAATCCATTATTCGA
EST: GACTATTCTATGACACTGGAAATGACCCCGAGGGTGGTT-CGTATGCAAG AGGGGCGCGAGCTTCCCTATGGGAAAACTTCAAGAACAATCCATTATTCGEST: gi|29686783|gb|CB683058.1|CB683058
genomic: GACTATTCTATGACACTGGAAATGACCCCGAGGGTGGTTAC-TATGCAAGgttagcaatg ... tgttatacagAGGGGCGCGAGCTTCCCTATGGGAAAACTTCAAGAACAATCCATTATTCG
EST: TGACACTGGAAATGACCCCGAGGGTGGTTACTATGCAAG AGGGGCGCGAGCTTCCCTATGGGAAAACTTCAAGAACAATCCATTATTCGAEST: gi|29656014|gb|CB652289.1|CB652289
genomic: TGACACTGGAAATGACCCCGAGGGTGGTTACTATGCAAGgttagcaatg ... tgttatacagAGGGGCGCGAGCTTCCCTATGGGAAAACTTCAAGAACAATCCATTATTCGA
EST: GGACTATTCTATGACACTGGAAATGACCCCGAGGGTGGTTACTATGCAAG AGGGGCGCGAGCTTCCCTATGGGAAAACTTCAAGAACAATCCATTATTCGA
genomic: GGACTATTCTATGACACTGGAAATGACCCCGAGGGTGGTTACTATGCAAGgttagcaatg ... tgttatacagAGGGGCGCGAGCTTCCCTATGGGAAAACTTCAAGAACAATCCATTATTCGA
gaatttttatccttctggttttgtcccatgtactcacttcagtgatgttatacagAGGGGCGCGAGCTTCCCTATGGGAAAACTTCAAGAACAATCCATTATTCGACATTTCCACGGATCACCCTCCCACCTACTATGAAGACATGCAGCGTGCT
tactcac putative branch site (score: 21)
atgttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagcaatgtttttaaagtaacagatctgaatttttatccttctggttttgtcccatgtactcacttcagtgatgttatacagAGGGGCGCGAGCTTCCCTATGGGAAAACTTCAAGAACAATCCATTATTCGACATTTCCACGGATCACCCTCCCACCTACTATGAAGACATGCAGCGTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA