1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tcaaatgtcctcttctctatttgtctctgagctattagcctgttacttttctctagcattgaagtgaggagagtttatagccctgtattttgttctccagGCAAACATGCTAGAAGGTGGTGGTAAAACTCCCATATTGAGCCCTGCTGAACTTCAGGAGATTGGTTTTAGCCTCGTAGTCTACCCATTGTCCCTGATTG
species | Oryza sativa |
transcript | LOC_Os04g31700.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TAGAAGAGATGAAAGCATTTTGTGCGGTTTCACCTAAAGTTCCAAAGAGG GCAAACATGCTAGAAGGTGGTGGTAAAACTCCCATATTGAGCCCTGCTGAAEST: gi|29679222|gb|CB675497.1|CB675497
genomic: TAGAAGAGATGAAAGCATTTTGTGCGGTTTCACCTAAAGTTCCAAAGATGgttagatgca ... tgttctccagGCAAACATGCTAGAAGGTGGTGGTAAAACTCCCATATTGAGCCCTGCTGAA
EST: TAGAAGAGATGAAAGCATTTTGTGCGGTTTCACCTAAAGTTCCAAAGATG GCAAACATGCTAGAAGGTGGTGGTAAAACTCCCATATTGAGCCCTGCTGAAEST: gi|29686536|gb|CB682811.1|CB682811
genomic: TAGAAGAGATGAAAGCATTTTGTGCGGTTTCACCTAAAGTTCCAAAGATGgttagatgca ... tgttctccagGCAAACATGCTAGAAGGTGGTGGTAAAACTCCCATATTGAGCCCTGCTGAA
EST: TAGAAGAGATGAAAGCATTTTGTGCGGTTTCACCTAAAGTTCCAAAGATG GCAAACATGCTAGAAGGTGGTGGTAAAACTCCCATATTGAGCCCTGCTGAAEST: gi|29686535|gb|CB682810.1|CB682810
genomic: TAGAAGAGATGAAAGCATTTTGTGCGGTTTCACCTAAAGTTCCAAAGATGgttagatgca ... tgttctccagGCAAACATGCTAGAAGGTGGTGGTAAAACTCCCATATTGAGCCCTGCTGAA
EST: TAGAAGAGATGAAAGCATTTTGTGCGGTTTCACCTAAAGTTCCAAAGATG GCAAACATGCTAGAAGGTGGTGGTAAAACTCCCATAEST: gi|33675457|gb|CF303696.1|CF303696
genomic: TAGAAGAGATGAAAGCATTTTGTGCGGTTTCACCTAAAGTTCCAAAGATGgttagatgca ... tgttctccagGCAAACATGCTAGAAGGTGGTGGTAAAACTCCCATA
EST: TAGAAGAGATGAAAGCATTTTGTGCGGTTTCACCTAAAGTTCCAAAGATG GCAAACATGCTEST: gi|58598367|gb|CK008895.1|CK008895
genomic: TAGAAGAGATGAAAGCATTTTGTGCGGTTTCACCTAAAGTTCCAAAGATGgttagatgca ... tgttctccagGCAAACATGCT
EST: TAGAAGAGATGAAAGCATTTTGTGCGGTTTCACCTAAAGTTCCAAAGATG GCAAACATGCTAGAAGGTGGTGGTAAAACTCCCATATTGAGCCCTGCTGAAEST: gi|29679221|gb|CB675496.1|CB675496
genomic: TAGAAGAGATGAAAGCATTTTGTGCGGTTTCACCTAAAGTTCCAAAGATGgttagatgca ... tgttctccagGCAAACATGCTAGAAGGTGGTGGTAAAACTCCCATATTGAGCCCTGCTGAA
EST: TAGAAGAGATGANAGCATTTTGTGCGGTTTCACCTAAAGTTCCAAAGATG GCAAACATGCTAGAAGGTGGTGGTAAAACTCCCATATTGAGCCCTGCTGAAEST: gi|58678066|gb|CK066753.1|CK066753
genomic: TAGAAGAGATGAAAGCATTTTGTGCGGTTTCACCTAAAGTTCCAAAGATGgttagatgca ... tgttctccagGCAAACATGCTAGAAGGTGGTGGTAAAACTCCCATATTGAGCCCTGCTGAA
EST: TAGAAGAGATGAAAGCATTTTGTGCGGTTTCACCTAAAGTTCCAAAGATG GCAAACATGCTAGAAGGTGGTGGTAAAACTCCCATATTGAGCCCTGCTGAA
genomic: TAGAAGAGATGAAAGCATTTTGTGCGGTTTCACCTAAAGTTCCAAAGATGgttagatgca ... tgttctccagGCAAACATGCTAGAAGGTGGTGGTAAAACTCCCATATTGAGCCCTGCTGAA
cttttctctagcattgaagtgaggagagtttatagccctgtattttgttctccagGCAAACATGCTAGAAGGTGGTGGTAAAACTCCCATATTGAGCCCTGCTGAACTTCAGGAGATTGGTTTTAGCCTCGTAGTCTACCCATTGTCCCTGATTG
ttttgttctcc CT-rich tract
tattttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcaaatgtcctcttctctatttgtctctgagctattagcctgttacttttctctagcattgaagtgaggagagtttatagccctgtattttgttctccagGCAAACATGCTAGAAGGTGGTGGTAAAACTCCCATATTGAGCCCTGCTGAACTTCAGGAGATTGGTTTTAGCCTCGTAGTCTACCCATTGTCCCTGATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccctgta