1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...actactatattcttaagcaattctctttagcattttgttatcttccccttgttctatccattgcattcttttgatctatgtatcaaattcgtttgtacagGGCCAGGTGTCTCATAAATGTCATCTAGGGGGAAGTATGTTTCTGTAAAGATTGGACCAATTCGTGTAGTTTCCAGCGAGCAG
species | Oryza sativa |
transcript | LOC_Os04g31690.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGTCAATGGTTGTTGCGGTTGAATCTGTTCTTCAAGAACCCATTCCCAAG GGCCAGGTGTTTCATAAATTGTCATCTAGGGGGAAGTATGTTTCTGTAAAGEST: gi|86522333|gb|CI162539.1|CI162539
genomic: AGTCAATGGTTGTTGCGGTTGAATCTGTTCTTCAAGAACCCATTCCCAAGgttaaaattt ... gtttgtacagGGCCAGGTGTCTCATAAA-TGTCATCTAGGGGGAAGTATGTTTCTGTAAAG
EST: AGTCAATGGTTGTTGCGGTTGAATCTGTTCTTCAAGAACCCATTCCCAAG GGCCAGGTGTCTCATAAATTGTCATCTAGGGGGAAGTATGTTTCTGTAAAGEST: gi|86887856|gb|CI297967.1|CI297967
genomic: AGTCAATGGTTGTTGCGGTTGAATCTGTTCTTCAAGAACCCATTCCCAAGgttaaaattt ... gtttgtacagGGCCAGGTGTCTCATAAA-TGTCATCTAGGGGGAAGTATGTTTCTGTAAAG
EST: AGTCAATGGTTGTTGCGGTTGAATCTGTTCTTCAAGAACCCATTCCCAAG GGCCAGGTGTCTCATAAATTGTCATCTAGGGGGAAGTATGTTTCTGTAAAGEST: gi|58594719|gb|CF993027.1|CF993027
genomic: AGTCAATGGTTGTTGCGGTTGAATCTGTTCTTCAAGAACCCATTCCCAAGgttaaaattt ... gtttgtacagGGCCAGGTGTCTCATAAA-TGTCATCTAGGGGGAAGTATGTTTCTGTAAAG
EST: AGTCAATGGTTGTTGCGGTTGAATCTGTTCTTCAAGAACCCATTCCCAAN GGCCAGGTGTCTCATAAATTGTCATCTAGGGGGAAGTATGTTTCTGTAAAGEST: gi|27546938|gb|CA767312.2|CA767312
genomic: AGTCAATGGTTGTTGCGGTTGAATCTGTTCTTCAAGAACCCATTCCCAAGgttaaaattt ... gtttgtacagGGCCAGGTGTCTCATAAA-TGTCATCTAGGGGGAAGTATGTTTCTGTAAAG
EST: AGTCAATGGTTGTTGCGGTTGAATCTGTTCTTCAAGAACCCATTCCCAAG GGCCAGGTGTCTCATAAATTGTCATCTAGGGGGAAGTATGTTTCTGTAAAG
genomic: AGTCAATGGTTGTTGCGGTTGAATCTGTTCTTCAAGAACCCATTCCCAAGgttaaaattt ... gtttgtacagGGCCAGGTGTCTCATAAAT-GTCATCTAGGGGGAAGTATGTTTCTGTAAAG
cccttgttctatccattgcattcttttgatctatgtatcaaattcgtttgtacagGGCCAGGTGTCTCATAAATGTCATCTAGGGGGAAGTATGTTTCTGTAAAGATTGGACCAATTCGTGTAGTTTCCAGCGAGCAG
ttttgat putative branch site (score: 9)
ttcgttt putative PPT
tatcaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actactatattcttaagcaattctctttagcattttgttatcttccccttgttctatccattgcattcttttgatctatgtatcaaattcgtttgtacagGGCCAGGTGTCTCATAAATGTCATCTAGGGGGAAGTATGTTTCTGTAAAGATTGGACCAATTCGTGTAGTTTCCAGCGAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcattct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tatgtat