1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
gtgcgtttctcaacatcccattttcaatttttcatactcgtgttattgacggtggaaactgaaaagtttgtattcttttcctgtgtatcagATTAGGGGGAAGAAGTGTGTAGTTATTGATCCCAAGCTCGCGGGTACCCTGTCTCTGATTCTGCAGACCTCACTGCTAAAG
species | Oryza sativa |
transcript | LOC_Os04g14654.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCTAAACATCCTCAAGAGT ATTAGGGGGAAGAAGTGTGTAGTTATTGATCCCAAGCTCGCGGGTACCCTGEST: gi|88315326|gb|CI613595.1|CI613595
genomic: GCTAAACATCCTCAAGAGTgtgcgtttct ... tgtgtatcagATTAGGGGGAAGAAGTGTGTAGTTATTGATCCCAAGCTCGCGGGTACCCTG
EST: GGAGCAGTCGCAGAAGGACCTGCTAAACATCCTCAAGAGT ATTAGGGGGAAGAAGTGTGTAGTTATTGATCCCAAGCTCGCGGGTACCCTGEST: gi|88443698|gb|CI591923.1|CI591923
genomic: GGAGCAGTCGCAGAAGGACCTGCTAAACATCCTCAAGAGTgtgcgtttct ... tgtgtatcagATTAGGGGGAAGAAGTGTGTAGTTATTGATCCCAAGCTCGCGGGTACCCTG
EST: GGAGCAGTCGCAGAAGGACCTGCTAAACATCCTCAAGAGT ATTAGGGGGAAGAAGTGTGTAGTTATTGATCCCAGGCTCGCGGGTACCCTGEST: gi|117229564|gb|CT859877.1|CT859877
genomic: GGAGCAGTCGCAGAAGGACCTGCTAAACATCCTCAAGAGTgtgcgtttct ... tgtgtatcagATTAGGGGGAAGAAGTGTGTAGTTATTGATCCCAAGCTCGCGGGTACCCTG
EST: GGAGCAGTCGCAGAAGGACCTGCTAAACATCCTCAAGAGT ATTAGGGGGAAGAAGTGTGTAGTTATTGATCCCAAGCTCGCGGGTACCCTGEST: gi|38471532|gb|CF955663.1|CF955663
genomic: GGAGCAGTCGCAGAAGGACCTGCTAAACATCCTCAAGAGTgtgcgtttct ... tgtgtatcagATTAGGGGGAAGAAGTGTGTAGTTATTGATCCCAAGCTCGCGGGTACCCTG
EST: GGAGCAGTCGCAGAAGGACCTGCTAAACATCCTCAAGAGT ATTAGGGGGAAGAAGTGTGTAGTTATTGATCCCAAGCTCGCGGGTACCCTG
genomic: GGAGCAGTCGCAGAAGGACCTGCTAAACATCCTCAAGAGTgtgcgtttct ... tgtgtatcagATTAGGGGGAAGAAGTGTGTAGTTATTGATCCCAAGCTCGCGGGTACCCTG
ctcgtgttattgacggtggaaactgaaaagtttgtattcttttcctgtgtatcagATTAGGGGGAAGAAGTGTGTAGTTATTGATCCCAAGCTCGCGGGTACCCTGTCTCTGATTCTGCAGACCTCACTGCTAAAG
tattgac putative branch site (score: 2)
tttgtattcttttcct putative PPT
tattctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcgtttctcaacatcccattttcaatttttcatactcgtgttattgacggtggaaactgaaaagtttgtattcttttcctgtgtatcagATTAGGGGGAAGAAGTGTGTAGTTATTGATCCCAAGCTCGCGGGTACCCTGTCTCTGATTCTGCAGACCTCACTGCTAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG