1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...ttcacaatactgaactgctgcggtagtgctgagttacttcttaacactgttttgccggtaatcaatttgcgcaaactaattccttttcctttttattcagTTCCTGGAGAGTATTTTTGTGGCATTGATGGTAGCGGCAGAAGATATGATGCAGATCAAAGACCTGAGCTTTCTAAGGGAACAGTAGAGTTTGTTGCTCC
species | Oryza sativa |
transcript | LOC_Os04g04020.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGGAAGGAAATGGCGCTGCAATCTTTGCACGCTGCTCAATGATG TTCCTGGAGAGTATTTTTGTGGCATTGATGGTAGCGGCAGAAGATATGATGEST: gi|88368197|gb|CI575079.1|CI575079
genomic: TGGAAGGAAATGGCGCTGCAATCTTTGCACGCTGCTCAATGATGgtaattattt ... ttttattcagTTCCTGGAGAGTATTTTTGTGGCATTGATGGTAGCGGCAGAAGATATGATG
EST: GGATGCTGGAAGGAAATGGCGCTGCAATCTTTGCACGCTGCTCAATGATG TTCCTGGAGAGTATTTTTGTGGCATTGATGGTAGCGGCAGAAGATATGATG
genomic: GGATGCTGGAAGGAAATGGCGCTGCAATCTTTGCACGCTGCTCAATGATGgtaattattt ... ttttattcagTTCCTGGAGAGTATTTTTGTGGCATTGATGGTAGCGGCAGAAGATATGATG
actgttttgccggtaatcaatttgcgcaaactaattccttttcctttttattcagTTCCTGGAGAGTATTTTTGTGGCATTGATGGTAGCGGCAGAAGATATGATGCAGATCAAAGACCTGAGCTTTCTAAGGGAACAGTAGAGTTTGTTGCTCC
aactaat putative branch site (score: 28)
ctaattccttttcctt CT-rich tract
ttttcctttttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcacaatactgaactgctgcggtagtgctgagttacttcttaacactgttttgccggtaatcaatttgcgcaaactaattccttttcctttttattcagTTCCTGGAGAGTATTTTTGTGGCATTGATGGTAGCGGCAGAAGATATGATGCAGATCAAAGACCTGAGCTTTCTAAGGGAACAGTAGAGTTTGTTGCTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- cacaata
- - - - - - - -tgctgcg
- - - - - - - - - - - - -gtgctga
- - - - - - - - - - - - - - - - - - - - - - - - - tttgccg