1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...atatgtttcatgatgcttctcttctagttacaagatctctagagcgtggagaacttgaataattgtatgcatttgcttttaactgaatatctctttgaagGTGATTGAACCTGATGCCCAAGCTGGTGACTTATGTACCCGACGAGAATACGCTCGATGGTTGGTGGTCGCAAGCAATTGTCTATCCAG
species | Oryza sativa |
transcript | LOC_Os03g64400.4 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CAGTTGACCCAGCCCAGGCAAGCGCATTGGCTGCACTACAGGTCCTAAAG GTGATTGAACCTGATGCCCAAGCTGGTGACTTATGTACCCGACGAGAATACEST: gi|58669849|gb|CK058535.1|CK058535
genomic: CAGTTGACCCAGCCCAGGCAAGCGCATTGGCTGCACTACAGGTCCTAAAGgtattttcat ... ctctttgaagGTGATTGAACCTGATGCCCAAGCTGGTGACTTATGTACCCGACGAGAATAC
EST: CAGTTGACCCAGCCCAGGCAAGCGCATTGGCTGCACTACAGGTCCTAAAG GTGATTGAACCTGATGCCCAAGCTGGTGACTTATGTACCCGACGAGAATACEST: gi|58611882|gb|CK039594.1|CK039594
genomic: CAGTTGACCCAGCCCAGGCAAGCGCATTGGCTGCACTACAGGTCCTAAAGgtattttcat ... ctctttgaagGTGATTGAACCTGATGCCCAAGCTGGTGACTTATGTACCCGACGAGAATAC
EST: CAGTTGACCCAGCCCAGGCAAGCGCATTGGCTGCACTACAGGTCCTAAAG GTGATTGAACCTGATGCCCAAGCTGGTGACTGATGTACCCGACGAGAATAC
genomic: CAGTTGACCCAGCCCAGGCAAGCGCATTGGCTGCACTACAGGTCCTAAAGgtattttcat ... ctctttgaagGTGATTGAACCTGATGCCCAAGCTGGTGACTTATGTACCCGACGAGAATAC
gtggagaacttgaataattgtatgcatttgcttttaactgaatatctctttgaagGTGATTGAACCTGATGCCCAAGCTGGTGACTTATGTACCCGACGAGAATACGCTCGATGGTTGGTGGTCGCAAGCAATTGTCTATCCAG
ttttaac putative branch site (score: 2)
tatctcttt putative PPT
ttgaataattgtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atatgtttcatgatgcttctcttctagttacaagatctctagagcgtggagaacttgaataattgtatgcatttgcttttaactgaatatctctttgaagGTGATTGAACCTGATGCCCAAGCTGGTGACTTATGTACCCGACGAGAATACGCTCGATGGTTGGTGGTCGCAAGCAATTGTCTATCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- -tgtttca
- - - - - tgatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - -cttgaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtatgc