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...tttgctgcaaatttgagaaccatgcatgaacattgtttgggtcacatatttcttgcttcaaaagttccttgggctgcttgatttatgtttatatgtgcagAAACAAGCAACGAACTCGCCAAGGAGCTTGGGGGCTATAAGCATGTGGTGGTTGCTCGTGATATTAAAGTTGTTGATGAAGAAACAACAAATGCTCTGCA
species | Oryza sativa |
transcript | LOC_Os03g63920.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGTTTATAATAGGAGTGATGAGATCGGTGTTGTCCTTTTTGGAACTAAAG AAACAAGCAACGAACTCGCEST: gi|88728604|gb|CI752114.1|CI752114
genomic: AGTTTATAATAGGAGTGATGAGATCGGTGTTGTCCTTTTTGGAACTAAAGgtattgttgc ... atatgtgcagAAACAAGCAACGAACTCGC
EST: AGTTTATAATAGGAGTGATGAGATCGGTGTTGTCCTTTTTGGAACTAAAG AAACAAGCAACGAAEST: gi|86904459|gb|CI308669.1|CI308669
genomic: AGTTTATAATAGGAGTGATGAGATCGGTGTTGTCCTTTTTGGAACTAAAGgtattgttgc ... atatgtgcagAAACAAGCAACGAA
EST: AGTTTATAATAGGAGTGATGAGATCGGTGTTGTCCTTTTTGGAACTAAAG AAACAAGCAACGAACTCGCCCAGGAGCTTGGGGGCTATAAEST: gi|88372362|gb|CI619692.1|CI619692
genomic: AGTTTATAATAGGAGTGATGAGATCGGTGTTGTCCTTTTTGGAACTAAAGgtattgttgc ... atatgtgcagAAACAAGCAACGAACTCGCCAAGGAGCTTGGGGGCTATAA
EST: AGTTTATAATAGGAGTGATGAGATCGGTGTTGTCCTTTTTGGAACTAAAG AAACAAGCAACGAACTCGCCAAGGAGCTTGGGGGCTATAAEST: gi|88314922|gb|CI609981.1|CI609981
genomic: AGTTTATAATAGGAGTGATGAGATCGGTGTTGTCCTTTTTGGAACTAAAGgtattgttgc ... atatgtgcagAAACAAGCAACGAACTCGCCAAGGAGCTTGGGGGCTATAA
EST: AGTTTATAATAGGAGTGATGAGATCGGTGTTGTCCTTTTTGGAACTAAAG AAACAAGCAACGAACTCGCCAAGGAGCTTGGGGGCTATAAGCATGTGGTGG
genomic: AGTTTATAATAGGAGTGATGAGATCGGTGTTGTCCTTTTTGGAACTAAAGgtattgttgc ... atatgtgcagAAACAAGCAACGAACTCGCCAAGGAGCTTGGGGGCTATAAGCATGTGGTGG
atatttcttgcttcaaaagttccttgggctgcttgatttatgtttatatgtgcagAAACAAGCAACGAACTCGCCAAGGAGCTTGGGGGCTATAAGCATGTGGTGGTTGCTCGTGATATTAAAGTTGTTGATGAAGAAACAACAAATGCTCTGCA
gcttgat putative branch site (score: 5)
ttgatttatgtttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttgctgcaaatttgagaaccatgcatgaacattgtttgggtcacatatttcttgcttcaaaagttccttgggctgcttgatttatgtttatatgtgcagAAACAAGCAACGAACTCGCCAAGGAGCTTGGGGGCTATAAGCATGTGGTGGTTGCTCGTGATATTAAAGTTGTTGATGAAGAAACAACAAATGCTCTGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- tgctgca
- - - - - - - - - - - tgcatga
- - - - - - - - - - - - - - - - ttgtttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctgctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttatgtt