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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagaatcatggctactcaaatattgcttacctataagatttaatgccctttcatgtgtgtaatctcactgatatgcatcaactgtagATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATCAAAGAGGAGCAGGGACAGATTGATGAGGCTGCTGATTTAATGCAAGAAG

Basic information

species Oryza sativa
transcript LOC_Os03g63430.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g63430.2 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G013750_T03 (Zea mays), 3'ss of exon 3
gtgagaatcatggctactcaaatattgcttacctataagatttaatgccctttcatgtgtgtaatctcactgatatgcatcaactgtagATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATCAAAGAGGAGCAGGGACAGATTGATGAGGCTGCTGATTTAATGCAAGAAG
||||||||  |  |  ||  |  |||  || | | ||||||| | ||   ||| |||||| ||||||||| | | |   ||| ||  |||| ||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||||| |||||||||||||| ||||||||||
gtgagaatttttccatcttgatgatta-ttccttgtaagattcattg--tttttatgtgtataatctcacagttgt---tcatctacagATTTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGCAAATATCAAAGAGGAGCAGGGAAAGATTGACGAGGCTGCTGATTTGATGCAAGAAG

upper sequence: LOC_Os03g63430.2 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G014116_T02 (Zea mays), 3'ss of exon 3
gtgagaatcatggctactcaaatattgcttacct-ataagatttaatgccctttcatgtgtgtaatctcactgatatgcatcaactgtagATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATCAAAGAGGAGCAGGGACAGATTGATGAGGCTGCTGATTTAATGCAAGAAG
|||||| |  |  |  ||  |  |||  |    | |||||||| | ||   ||  |||||||||||||||  | | |   ||| ||  |||| ||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||| | |||||||||||||| ||||||||||
gtgagattttttccatcttgatgattattccttttataagattcattg--tttatatgtgtgtaatctcatagttgt---tcatctacagATCTATGTTGAGATAGAGAGAGCAAGATTGATCAAAAGGCTTGCAAAAATTAAAGAGGAGCAGGGACAAATTTACGAGGCTGCTGATTTGATGCAAGAAG

upper sequence: LOC_Os03g63430.2 (Oryza sativa), 3'ss of exon 3
lower sequence: GLYMA04G39520.1 (Glycine max), 3'ss of exon 3
gtgagaatc--atggctactcaaat-attgcttacctataagatttaatgccctttcatgtgtgtaatctcactg-atat-gcatcaactg-tagATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATCAAAGAGGAGCAGGGACAGATTGATGAGGCTGCTGATTTAATGCAAGAAG
||||| ||   |||  | | |   | ||| |||     ||   |  ||||   | | ||   || |   | | |  || | | ||||  || |||||||| || ||||| ||||||||  | |||||||| | ||||||||||||||| || || || ||||  || | ||| ||||||||||| ||||||||| 
gtgagcatatgatgttttcactcttcattcctttttattatcctccaatgtagtct-atcgatgcatgtttaatatatgttgtatcatttgctagATATACGTTGAGATTGAGAGAGCTCGGTTGATCAAGAAACTTGCAAAAATCAAGGAAGAACAAGGACTTATAGCTGAAGCTGCTGATTTGATGCAAGAAA

upper sequence: LOC_Os03g63430.2 (Oryza sativa), 3'ss of exon 3
lower sequence: GLYMA06G15330.1 (Glycine max), 3'ss of exon 3
---gtgagaatcatggctactcaaat-attgcttacctataagatttaatgccctttcatgtgtgtaatctcactg-atat-gcatcaactgt-agATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATCAAAGAGGAGCAGGGACAGATTGATGAGGCTGCTGATTTAATGCAAGAAG
   |     || |||  | | |   | ||| |||   ||| |   |  |      |  ||   ||||   | | |  || | | ||||  ||| ||||||| || ||||| ||||||||  | |||||||| | |||||||||||| || || || || ||||  || | ||| ||||||||||| ||||||||| 
gttgatcatatgatgttttcactcttcattccttttttattattctccaatttagtctatcgatgtatgtttaatatatgttgtatcatttgttagATATACGTCGAGATTGAGAGAGCTCGGTTGATCAAGAAACTTGCAAAAATTAAGGAAGAACAAGGACTTATAGCTGAAGCTGCTGATTTGATGCAAGAAA

upper sequence: LOC_Os03g63430.2 (Oryza sativa), 3'ss of exon 3
lower sequence: EFJ24205 (Selaginella moellendorffii), 3'ss of exon 2
gtgagaatcatggctactcaaatattgcttacctataagatttaatgccctttcatgtgtgtaatctcactgatatgcatcaactgtagATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATCAAAGAGGAGCAGGGACAGATTGATGAGGCTGCTGATTTAATGCAAGAAG
                        ||  |     | ||||||  | ||         | ||   |   ||| | || ||     |  |||| |||||||||||||||||||| ||||||||   |||||| || | ||| ||||| |  || |||| ||||| |||||| || ||  | ||||| ||||
-----------------------gtttgtagtgaacaagattgcaagc---------tatgagttgctacttagat-cactttgtccagATCTATGTGGAGATAGAGAGAGCCAGATTGATTCGAAGACTGGCGACAATTAAAGAAGGCCAAGGACTGATTGCTGAGGCGGCAGAGCTGATGCAGGAAG

upper sequence: LOC_Os03g63430.2 (Oryza sativa), 3'ss of exon 3
lower sequence: EFJ35271 (Selaginella moellendorffii), 3'ss of exon 3
gtgagaatcatggctactcaaatattgcttacctataagatttaatgccctttcatgtgtgtaatctcactgatatgcatcaactgtagATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATCAAAGAGGAGCAGGGACAGATTGATGAGGCTGCTGATTTAATGCAAGAAG
                        ||  |     | ||||||  | ||         | ||   |   ||| | || |||    |  |||| |||||||||||||||||||| ||||||||   |||||| || | ||| |||||||  || |||| ||||| |||||| || ||  | ||||| ||||
-----------------------gtttgtagtgaacaagattgcaagc---------tatgagttgctacttagat-cattttgtccagATCTATGTGGAGATAGAGAGAGCCAGATTGATTCGAAGACTGGCGACAATTAAAGAGGGCCAAGGACTGATTGCTGAGGCGGCAGAGCTGATGCAGGAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86420511|gb|CI056500.1|CI056500
EST:     ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAA                         ATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATC
genomic: ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAAgtgagaatca ... tcaactgtagATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATC
EST: gi|88350957|gb|CI620617.1|CI620617
EST:     ACACAGGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAA                         ATATATGTGGAGATAGAGAGAGC
genomic: ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAAgtgagaatca ... tcaactgtagATATATGTGGAGATAGAGAGAGC
EST: gi|33803131|gb|CF327436.1|CF327436
EST:     ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAA                         ATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATC
genomic: ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAAgtgagaatca ... tcaactgtagATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATC
EST: gi|88453223|gb|CI565665.1|CI565665
EST:     ANACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAA                         ATATATGTGGAGATAGAGAG
genomic: ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAAgtgagaatca ... tcaactgtagATATATGTGGAGATAGAGAG
EST: gi|58681663|gb|CK070350.1|CK070350
EST:     ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAA                         ATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATC
genomic: ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAAgtgagaatca ... tcaactgtagATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATC
EST: gi|58685186|gb|CK073873.1|CK073873
EST:     ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAA                         ATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATC
genomic: ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAAgtgagaatca ... tcaactgtagATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATC
EST: gi|33812345|gb|CF332062.1|CF332062
EST:     ATCTGCTGGAAAA                         ATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATC
genomic: ATCTGCTGGAAAAgtgagaatca ... tcaactgtagATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATC
EST: gi|88265103|gb|CI368877.1|CI368877
EST:     ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAA                         ATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATC
genomic: ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAAgtgagaatca ... tcaactgtagATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATC
EST: gi|29664482|gb|CB660757.1|CB660757
EST:     ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAA                         ATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATC
genomic: ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAAgtgagaatca ... tcaactgtagATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATC
EST: gi|58658268|gb|CK046948.1|CK046948
EST:     ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAA                         ATATATGTGGAGATAGAGAGAGCAAGATTGATCAA
genomic: ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAAgtgagaatca ... tcaactgtagATATATGTGGAGATAGAGAGAGCAAGATTGATCAA
EST: gi|88210956|gb|CI212596.1|CI212596
EST:     ACACACGTATTGAGCTAATCAAGACGTTGAGCAGCGTATCTGCTGGAAAA                         ATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATC
genomic: ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAAgtgagaatca ... tcaactgtagATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATC
EST: gi|58694542|gb|CK083229.1|CK083229
EST:     ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAA                         ATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATC
genomic: ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAAgtgagaatca ... tcaactgtagATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATC
EST: gi|88351878|gb|CI624683.1|CI624683
EST:     ACAAACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAA                         ATATATGTGGAGATAG
genomic: ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAAgtgagaatca ... tcaactgtagATATATGTGGAGATAG
EST: gi|58681237|gb|CK069924.1|CK069924
EST:     ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAA                         ATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATC
genomic: ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAAgtgagaatca ... tcaactgtagATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATC
EST: gi|33656126|gb|CF278740.1|CF278740
EST:     ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAA                         ATATATGTGGAGATAGAGAGAGC
genomic: ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAAgtgagaatca ... tcaactgtagATATATGTGGAGATAGAGAGAGC
EST: gi|29645307|gb|CB650314.1|CB650314
EST:     ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAA                         ATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATC
genomic: ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAAgtgagaatca ... tcaactgtagATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATC
EST: gi|33795887|gb|CF323811.1|CF323811
EST:     ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAA                         ATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATC
genomic: ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAAgtgagaatca ... tcaactgtagATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATC
EST: gi|58666529|gb|CK055215.1|CK055215
EST:     ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAA                         ATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATC
genomic: ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAAgtgagaatca ... tcaactgtagATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATC
EST: gi|29658196|gb|CB654471.1|CB654471
EST:     ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAA                         ATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATC
genomic: ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAAgtgagaatca ... tcaactgtagATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATC
EST: gi|29664785|gb|CB661060.1|CB661060
EST:     ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAA                         ATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATC
genomic: ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAAgtgagaatca ... tcaactgtagATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATC
EST: gi|58607299|gb|CK035332.1|CK035332
EST:     ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAA                         ATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATC
genomic: ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAAgtgagaatca ... tcaactgtagATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATC
EST: gi|58659555|gb|CK048235.1|CK048235
EST:     ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAA                         ATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATC
genomic: ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAAgtgagaatca ... tcaactgtagATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATC
EST: gi|58593588|gb|CF991896.1|CF991896
EST:     ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAA                         ATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATC
genomic: ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAAgtgagaatca ... tcaactgtagATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATC
EST: gi|29639941|gb|CB644950.1|CB644950
EST:     ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAA                         ATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATC
genomic: ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAAgtgagaatca ... tcaactgtagATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATC
EST: gi|58679603|gb|CK068290.1|CK068290
EST:     ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAA                         ATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATC
genomic: ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAAgtgagaatca ... tcaactgtagATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATC
EST: gi|29678374|gb|CB674649.1|CB674649
EST:     ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAA                         ATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATC
genomic: ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAAgtgagaatca ... tcaactgtagATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATC
EST: gi|58678571|gb|CK067258.1|CK067258
EST:     ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAA                         ATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATC
genomic: ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAAgtgagaatca ... tcaactgtagATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATC
EST: gi|86495227|gb|CI137860.1|CI137860
EST:     ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAA                         ATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATC
genomic: ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAAgtgagaatca ... tcaactgtagATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATC
EST: gi|29637544|gb|CB642553.1|CB642553
EST:     ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAA                         ATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATC
genomic: ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAAgtgagaatca ... tcaactgtagATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATC
EST: gi|117217926|gb|CT845200.1|CT845200
EST:     ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAA                         ATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATC
genomic: ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAAgtgagaatca ... tcaactgtagATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATC
EST: gi|88454338|gb|CI569910.1|CI569910
EST:     ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAA                         ATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATC
genomic: ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAAgtgagaatca ... tcaactgtagATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATC
EST: gi|86534283|gb|CI174489.1|CI174489
EST:     ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAA                         ATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATC
genomic: ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAAgtgagaatca ... tcaactgtagATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATC
EST: gi|86894782|gb|CI310174.1|CI310174
EST:     ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAA                         ATATATGTGGAGA
genomic: ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAAgtgagaatca ... tcaactgtagATATATGTGGAGA
EST: gi|88390672|gb|CI609297.1|CI609297
EST:     ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAA                         ATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGA
genomic: ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAAgtgagaatca ... tcaactgtagATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGA
EST: gi|19388435|gb|BM929262.1|BM929262
EST:     ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAA                         ATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATC
genomic: ACACACGTATTGAGCTAATCAAGACGTTGAGCAGTGTATCTGCTGGAAAAgtgagaatca ... tcaactgtagATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ataagatttaatgccctttcatgtgtgtaatctcactgatatgcatcaactgtagATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATCAAAGAGGAGCAGGGACAGATTGATGAGGCTGCTGATTTAATGCAAGAAG
                                 cactgat  putative branch site (score: 3)
     atttaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagaatcatggctactcaaatattgcttacctataagatttaatgccctttcatgtgtgtaatctcactgatatgcatcaactgtagATATATGTGGAGATAGAGAGAGCAAGATTGATCAAAAGACTTGCAAAAATCAAAGAGGAGCAGGGACAGATTGATGAGGCTGCTGATTTAATGCAAGAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG