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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttcatgatttccttttgtttttatacccttccttgaagttcgtatacctctattcttccctcacaatttattcttattgctttttacttcgttttgcagGACTAGCCCTGAACTTCTGCTGAACCCA

Basic information

species Oryza sativa
transcript LOC_Os03g63090.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|218490476|gb|FG964035.1|FG964035
EST:     TTCCCTTGCCAAGAGGTCGAGAGGCACAACAAACCGGAGGTGGAGCTAAA                         GACTAGCCCTGAACTTCTGCTGAACCCA
genomic: TTCCCTTGCCAAGAGGTCGAGAGGCACAACAAACCGGAGGTGGAGCTAAAgtaagtcgtg ... cgttttgcagGACTAGCCCTGAACTTCTGCTGAACCCA
EST: gi|33683666|gb|CF311905.1|CF311905
EST:     TCCCTTGCCAAGAGGTCGAGAGGCACAACAAANCCGGAGGTGGAGCTAAA                         GACTAGCCCTGAACTTCTGCTGAACCCA
genomic: TCCCTTGCCAAGAGGTCGAGAGGCACAACAAA-CCGGAGGTGGAGCTAAAgtaagtcgtg ... cgttttgcagGACTAGCCCTGAACTTCTGCTGAACCCA
EST: gi|117226003|gb|CT845644.1|CT845644
EST:     TTCCCTTGCCAAGAGGTCGAGAGGCACAACAAACCGGAGGTGGAGCTAAA                         GACTAGCCCTGAACTTCTGCTGAACCCA
genomic: TTCCCTTGCCAAGAGGTCGAGAGGCACAACAAACCGGAGGTGGAGCTAAAgtaagtcgtg ... cgttttgcagGACTAGCCCTGAACTTCTGCTGAACCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacctctattcttccctcacaatttattcttattgctttttacttcgttttgcagGACTAGCCCTGAACTTCTGCTGAACCCA
             ccctcac  putative branch site (score: 3)
                                   ctttttacttcgtttt  putative PPT
                    aatttattcttattgc  TA-rich tract